Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00434 ATGGCTTCTTCACCTTCCATCAAACACACTCACCACCTTAACCGCACCGAACTCTTCATGGAAGAACAGACCCTTCTGAAGAACCATCACTACCCCAAACTCATTAGAATACGTGTCACCGACGCCGACGCCACCGACTCCTCCAGCGACGACGACGACGACGAGCCCTCCGTCTCCTCCACGCGCCGCCGGGTCAAAAACTTCGTCAACGAGATCACCATCCAAAGCGGCGGTGGCGTTAACGTTGTTTCCAAGAAGAGAAGGTTCAAGTCCGGTGCCGGAACCCCGTCGTGTCGGCGGCGGACGGGGGCGAAGAAGTTCCGGGGAGTCAGGCAGCGGCCCTGGGGGAAGTGGGCGGCGGAGATAAGAGACCCGTCGCGCGGCGTGCGGCTCTGGCTGGGAACCTACGACACCGCCGAGGAAGCCGCCATTGTGTACGACAACGCGGCCATTCAGCTGCGTGGCGCAGACGCGCTCACCAATTTCATAACGCCGCCGCCGGAGAACAGAAAAACCGGCTACTGCTCCGGCGAGGAGTCTCGGAACAACGACTTGCGTTCCCCCACTTCGGTTCTTCGGTGCTGTTCGGTGTCCGAGGAAGCTGACTCCGTAACCGCAACCGCAAACGACGTCGTCGATGAGTCCGTAACTGCAAACGACGTCGTCGATGAGTCCGTAACTGCAAACGACGTCGTTGGGCCCTCAAGCAAGTGCGAATATTCATGCGTTTCGGAGGATAATAATAATGAGTTGAAACCGGAGTCAGTGTTTCCTATTATTCCTAACGATGTGGTATTTGACTTTGAAAGTACGTTAGATATGTTTGACGAGGGCGTTAATAATGTTCCAGAGAGTAGTATATTCTTCGCGGATGATTTTGATTTCACTGGAAGCTTTAGCTTTGTTAGTGAGAATTTAGATTTGGGTTTTGGGTCTACAAGTTGGCATAGAGAGTGTGATAATTTCCAAGACATTGGGGATTTGTTTGTTTGGGATCCTCTTGTCGCTCTTTGA 1014 0.5345 MASSPSIKHTHHLNRTELFMEEQTLLKNHHYPKLIRIRVTDADATDSSSDDDDDEPSVSSTRRRVKNFVNEITIQSGGGVNVVSKKRRFKSGAGTPSCRRRTGAKKFRGVRQRPWGKWAAEIRDPSRGVRLWLGTYDTAEEAAIVYDNAAIQLRGADALTNFITPPPENRKTGYCSGEESRNNDLRSPTSVLRCCSVSEEADSVTATANDVVDESVTANDVVDESVTANDVVGPSSKCEYSCVSEDNNNELKPESVFPIIPNDVVFDFESTLDMFDEGVNNVPESSIFFADDFDFTGSFSFVSENLDLGFGSTSWHRECDNFQDIGDLFVWDPLVAL 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00434 337 SUPERFAMILY DNA-binding domain 106 162 IPR016177 GO:0003677
Pumo6g00434 337 CDD AP2 105 162 IPR001471 GO:0003700|GO:0006355
Pumo6g00434 337 ProSiteProfiles AP2/ERF domain profile. 106 163 IPR001471 GO:0003700|GO:0006355
Pumo6g00434 337 FunFam Ethylene-responsive transcription factor 2 105 164 - -
Pumo6g00434 337 MobiDBLite consensus disorder prediction 42 64 - -
Pumo6g00434 337 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 32 229 - -
Pumo6g00434 337 SMART rav1_2 106 169 IPR001471 GO:0003700|GO:0006355
Pumo6g00434 337 Pfam AP2 domain 106 155 IPR001471 GO:0003700|GO:0006355
Pumo6g00434 337 Gene3D AP2/ERF domain 105 164 IPR036955 GO:0003700|GO:0006355
Pumo6g00434 337 PRINTS Ethylene responsive element binding protein signature 129 145 IPR001471 GO:0003700|GO:0006355
Pumo6g00434 337 PRINTS Ethylene responsive element binding protein signature 107 118 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00434 Pumo-Chr6 5436853 5438133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00434 5 337 AP2-EREBP Transcription Factor Family AT4G23750 40.000 1.34e-54 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo6g00434 AP2 3.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00434 - - gmx:100813992 518.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02382 8 61039824 61041001 Pumo6g00434 6 5436853 5438133 PCT