Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00423 ATGGGTGGCACAGTTGTTGCTGAAGTACCCACAAAGAGGGGAAGGGGCAGAAGGGCTCTGAAGGAGAAGAACATCATAGCCACACCAATTTCGCCCTCATCTGATAAGGCACAAGTTCCCTCAAAGAAACAACAAGATGATTCCAAGAAGCAGCAATCTTTTGAGAAAGAATTGCTCGAGATGCAGGAAATGCTGCAGCAGATGCGCCTCGAGAAGGAGAAGACCGAAGAGCTCTTGAAGGCCAAGGACGAGGCTCTCAAGCAGAAGGACGAAGAGCTCGAAAACCGTGGCCGCGAGCAAGAGAAGCTTCAGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGAATTTGCCTGTGTTGATGAAAGATAATGAACAAAAGAAGGATAAGAAGAAGAAGGGGTGCTCTGAGAAGAAAAGGCCTTCTCCACCTTACATTTTGTGGATGAAAGACCAATGGAATGAGATCAAGAAAGCGAACCCAGAGGCAGAATTTAAGGAAATTTCTAACATGCTGGGGGCTAAATGGAAGACTGTTAGTGCAGAAGAGAAGAAACCTTATGAGGAGAAATACCATGCTGAGAAAGAAGCTTATTTGCAAGTGATTGCAAAGGAAAAACGTGAGATTGAGGCAATGAGGTTGTTGGAAGAGGAGCAGAAGCAGAGAACTGCCATGGAATTGCTTGAACAGTACATGCAATTCAAACAAGAGGCAGAAAAAGAGACCAAGAAGAACAAGAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCAGCTTACTTCTTGTTCACTAATGATAGGCGAGCAGCTCTTCTTGCTGAGAACAAGAATTTCTTGGAGGTTCCAAAAATCACAGCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAGAGGCCCTATGAAGAGATGGCAAAGAAGAACAAGGAGAAATATGCCCTAGAAATCGAGGCTTATAAACAGAAGAAAGATGAGGAGGCTGCCCATCTCATGAAGGAAGAGGAGGAACACATGAAACTTCAGAAACAGGAAGCCTTGCAATTGCTGAAAAAGAAGGAGAAAACTGAAAATATAATCAAGAAAACAAAACAGAAGAAGAAACAAAACAAGGAAGATAAGAATTCTGATCCAAACAGGCCTAAGAGGCCTCCATCCTCATTCCTCTTATTCAGCAAAGAAGCAAGGAAAACTTTACAGGAGGAGCGACCAGGAATCAACACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGGAACTGAGCGAGGAGGATAGACAATTCTGGAATGGTGAAGCATCTAAAGCAATGGATGCATACAAGAAGGAATTGGAGGAATACAACAAATCCCTTGCCTCAACTGCAAGCCAGGAGCAGAAAACCGAATGA 1404 0.4338 MGGTVVAEVPTKRGRGRRALKEKNIIATPISPSSDKAQVPSKKQQDDSKKQQSFEKELLEMQEMLQQMRLEKEKTEELLKAKDEALKQKDEELENRGREQEKLQTELKKLQKLKEFKPTMNLPVLMKDNEQKKDKKKKGCSEKKRPSPPYILWMKDQWNEIKKANPEAEFKEISNMLGAKWKTVSAEEKKPYEEKYHAEKEAYLQVIAKEKREIEAMRLLEEEQKQRTAMELLEQYMQFKQEAEKETKKNKKEKDPLKPKHPMSAYFLFTNDRRAALLAENKNFLEVPKITAEEWKNMTEEQKRPYEEMAKKNKEKYALEIEAYKQKKDEEAAHLMKEEEEHMKLQKQEALQLLKKKEKTENIIKKTKQKKKQNKEDKNSDPNRPKRPPSSFLLFSKEARKTLQEERPGINTSTLNALVSLKWKELSEEDRQFWNGEASKAMDAYKKELEEYNKSLASTASQEQKTE 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00423 467 MobiDBLite consensus disorder prediction 81 102 - -
Pumo6g00423 467 MobiDBLite consensus disorder prediction 127 144 - -
Pumo6g00423 467 Coils Coil 307 377 - -
Pumo6g00423 467 CDD HMG-box_AtHMGB6-like_rpt1 145 211 - -
Pumo6g00423 467 SUPERFAMILY HMG-box 246 331 IPR036910 -
Pumo6g00423 467 MobiDBLite consensus disorder prediction 240 260 - -
Pumo6g00423 467 Pfam HMG (high mobility group) box 385 453 IPR009071 -
Pumo6g00423 467 Pfam HMG (high mobility group) box 144 205 IPR009071 -
Pumo6g00423 467 Pfam HMG (high mobility group) box 259 325 IPR009071 -
Pumo6g00423 467 SMART hmgende2 142 212 IPR009071 -
Pumo6g00423 467 SMART hmgende2 258 326 IPR009071 -
Pumo6g00423 467 SMART hmgende2 384 454 IPR009071 -
Pumo6g00423 467 MobiDBLite consensus disorder prediction 1 61 - -
Pumo6g00423 467 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 385 453 IPR009071 -
Pumo6g00423 467 Coils Coil 207 249 - -
Pumo6g00423 467 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 259 325 IPR009071 -
Pumo6g00423 467 Coils Coil 51 113 - -
Pumo6g00423 467 MobiDBLite consensus disorder prediction 118 148 - -
Pumo6g00423 467 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 143 211 IPR009071 -
Pumo6g00423 467 MobiDBLite consensus disorder prediction 240 261 - -
Pumo6g00423 467 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 19 462 IPR044601 GO:0003677
Pumo6g00423 467 MobiDBLite consensus disorder prediction 40 57 - -
Pumo6g00423 467 MobiDBLite consensus disorder prediction 332 409 - -
Pumo6g00423 467 MobiDBLite consensus disorder prediction 332 367 - -
Pumo6g00423 467 Gene3D High mobility group box domain 242 341 IPR036910 -
Pumo6g00423 467 Gene3D High mobility group box domain 127 231 IPR036910 -
Pumo6g00423 467 Gene3D High mobility group box domain 365 466 IPR036910 -
Pumo6g00423 467 Coils Coil 435 462 - -
Pumo6g00423 467 SUPERFAMILY HMG-box 380 458 IPR036910 -
Pumo6g00423 467 SUPERFAMILY HMG-box 131 206 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00423 Pumo-Chr6 5335874 5338537 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Pumo6g00423 HMG_box 8.4e-16 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00423 K09273 - gmx:100814709 652.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00423 6 5335874 5338537 Pumo6g00423 6 5335874 5338537 ECH