Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00409 ATGGCTCCCTCAGCCATACTATGTGCTTTTTGCATCTTCCTTTTCCATCTCCAAAGCACAAGAGGGAATAAGCAGGTTAATTGCAACACCTTGCGATGCGGCGATATAGATATTCAGTTCCCTTTCGGTTTGAGAGGATCCAACCAAGATCGTCGCTGCAGGTATTACCCAATTCAAAGTTTCCAACTTTCGTGCCTCGACCAAACACAAACCATTCTCACCCTCCCAGGTTTCGGTAACTTAACCGTGAAAAGCATCGATTACGATTCCCAAAGCATCCGAGTCAACGACCCCGATGGGTGCCTCCCTAAACGGTTCTTACACAAGTGGAACCTTTCGGAATCACCTTTTGTTTTAAATCCCATGATTTATGGGACAAGTTCCTTTAACCTCACGTTCTTGCGTTGCCCCTCCGACGAAACCGACTCGTCTCAATTCCCGCTAGTGCCAATTTCGTGCCTAAGCGACAACAAAAACTACTCGGTCATAGTTTCGTGGTCACAACCTATTGTGTCTTCACCCATGTTGTCTCAACGCTGCGAGGTGATGTCTCGGGCTCTTGTCCCTCTCCCAGTGTTGGACATGCCCATGTGGCCCTTCTGGCCCGATCTCAACACCGACCTTGAGTTGGTCTGGACCGAACCCTATTGTAGGGACTGTGCACTTAGTGGTCAGGTTTGTGGCTTCTCCAATGAGAAAACTAAAAGCCCTCAAGTTCGGTGTTTCGCTAGTGACTCCTCCAGCAAAGGTCTTTCAAGAAGTGTCAAATATGGCTTAGCTATCGGAGTGGGAATACCAGGACTCTTGTGTCTAATTGGGATTTCTTGCTTTATCTGTGGTAAGGTCAGAATGCTGACCCATCGCCCACGTAGCACAAATCTCCCAGTCACAATTTCTCTAGAACCTGTTCCTTTTGTAATGGGACTTGACGGTGCCACAATTGAAAAGTATCCCAAAACTCTAATTGGGGAGAGTGGGCGCTTATTGAAGGCCAATGACAGTACCTGTGCAATTTGCCTTTGTGAATATGAACCCAAAGAGACGTTGAGAAGCATACCCGAATGTAACCATTATTTTCACGCAGATTGTATAGACGAGTGGCTCAGATTGAATGGCACGTGCCCCCTGTGCAGGAATTCGCCTGAGGCATCTTCCACTGCTTCTTTTTCTTCCTTGTCTCCCAGTTCCTCATTGTCCTCTCGCTCTCCACAGTAG 1215 0.4757 MAPSAILCAFCIFLFHLQSTRGNKQVNCNTLRCGDIDIQFPFGLRGSNQDRRCRYYPIQSFQLSCLDQTQTILTLPGFGNLTVKSIDYDSQSIRVNDPDGCLPKRFLHKWNLSESPFVLNPMIYGTSSFNLTFLRCPSDETDSSQFPLVPISCLSDNKNYSVIVSWSQPIVSSPMLSQRCEVMSRALVPLPVLDMPMWPFWPDLNTDLELVWTEPYCRDCALSGQVCGFSNEKTKSPQVRCFASDSSSKGLSRSVKYGLAIGVGIPGLLCLIGISCFICGKVRMLTHRPRSTNLPVTISLEPVPFVMGLDGATIEKYPKTLIGESGRLLKANDSTCAICLCEYEPKETLRSIPECNHYFHADCIDEWLRLNGTCPLCRNSPEASSTASFSSLSPSSSLSSRSPQ 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00409 404 SUPERFAMILY RING/U-box 329 380 - -
Pumo6g00409 404 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 381 IPR046948 -
Pumo6g00409 404 SMART ring_2 336 377 IPR001841 -
Pumo6g00409 404 MobiDBLite consensus disorder prediction 382 404 - -
Pumo6g00409 404 Pfam Ring finger domain 335 378 IPR001841 -
Pumo6g00409 404 CDD RING-H2_EL5-like 336 378 - -
Pumo6g00409 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 306 383 IPR013083 -
Pumo6g00409 404 Pfam Wall-associated receptor kinase galacturonan-binding 28 97 IPR025287 GO:0030247
Pumo6g00409 404 ProSiteProfiles Zinc finger RING-type profile. 336 378 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00409 Pumo-Chr6 5192808 5196559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00409 27 387 C3H Transcription Factor Family AT2G46495 35.870 1.17e-49 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00409 - - gmx:100810240 682.174