Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00399 ATGGAGGCGGATTTCGTGACGAATGATATGCTCACACTCACGCAGGACGCTTTTGATGCCAACGATAATGATGATGCAGCTGTTGAAGGGGAAAGATGTGGAATATGTATGGATATGGTTATTGACAGGGGACTTCTGGATTGCTGTCAGCACTGGTTCTGCTTTGTATGCATTGACAACTGGGCTACCATCACTAATCTTTGCCCACTTTGCCAGAATGAGTTTCAGTTAATCACTTGTGTTCCAGTATATGATACCATTGGAAACAATAAAGTTGAAGATGATTCATTCTTCAGAGATGATGACTGGTCCATTGAAGAGAAGAATAACACACTGTCATTTCCCTCTTACTACATTGATGAAAATGCAGTTATTTGCTTGGATGGTGATGGCTGCAAGGTTCGCAATGGGTTGGCTACTATTGAAGGAGATTCTGATCTCGATACATCAATAGCCTGTGATTCATGTGACATATGGTATCATGCCTTCTGTGTGGGATTTGATACTGAAGGTACATCGGACAGTACATGGTTATGCCCCAGATGTGTGGTTGATGAAGTTTCTAAAGGAACACCCAATTCAGTAGAGAGGACATCCGTGGAATGCAATGCAGATAATCATAATAGTAACAGTGAATGCCATGCTGAGGATTCCTTTTCAGGAAAAGTGTCTGTGTCTGTTGCTGATACAGGAGAGACGGCTGTTGTTGTTTCGATGGTTGACCGAACAAAATGGGTTCCAGCAACAAGTGAGAAAAGCCTATTGCCTTTTGAAGTTGGTGGGGACCCGATGACTGAATCATGTATTTTAATGTCTGACACAAATAATCAGCAAAGTGTGGAAGTGAAGACAAATACGTTACCAATCATGGAGGAAGAAGAACTGGAACTGTCTTTGTCAAATAATATATCCTGTAGCGTAACTTCTAAATCCTTAGTGCATAATGATTTAAAGAAAAGTGTCAGTGGAGCAAGTAATGAACCAAGTGGCTTTGACGGAACCAAGTTATTTGATGAGTCCCATACTAAAACTAGTCCATCCACAATTGAATCCGATATGGGTCTTCATCTTGGTTTGTCAGTGGGCTCTTTCTTATCTGACAAGAATGAAACAAAAGATCAAGCAACTGATGTCCTGTGCTTGAGTTCAGAAGAATGTTTTTTGAAAGGAGATGAAATTGAAGCCAATGCTTGTAAGGACAATGCCAGAGTGGCTGGTGGAAAGAGAAAGCATGCTGATTACAGTAATGAGCAAGTTCATATAAAGGCTGATGATGGAGATGTCAAGCCTGAACTTCCGGATGAAGTTGCACTAAAGAAAATTAGAGCTACTGGTAGTCAAATGACTAGTACTAATGACTCAGCAGATGCTCATCATTTAGAAAATGCTCAGAAACGCCCTGTTTTAAAACATTCTCCAACAAAGGCGATTGTCAAATCAGATATAATGAATATAGTTAAAGGGACAAACCGGAGGCATTCCAAGGGACGTACTGTCACTAATGCTTGTGACAAGTTATCTGAAAACAAAGGAAATATGGCTGGGTTGAGGGTTAAAAAGATCATGAAGAGAGTCTCTGATGATGGAGAATCATCCTTGGTAGTTCAAAATCTAAGGAAGGAAATTAGAGAAGCTGTCCGTAACAAATCCTCTATAAACTTTGAGGATAACCATTTTGATCCCAAGCTTCTTGAAGCATTTAGGGCTGCTATAACAGGGCCTAAAACTGAACTTGTAAACAAGTTATCCCCTGCAGCTATAAAGGCAAAGAAGTCAATGTTGCAGAAAGGAAAAGTGCGTGAAAATCTAACAAAGAAAATTTTTGGGACTTCCAATGGAAGAAGAAAGCGTGCATGGGATAGGGACTGTGAAATTGAGTTTTGGAAATATCGTTGCATGAGAGCTACAAAGCCTGAAAAGATTGAAACTTTAAAATCAGTTCTTGATCTACTAAGAAAAGGTTCAGACAGTCCAGAATCAAAGCAATCTTCTGAATGTCAGGCCAAAAATCCTATTCTTTCCAGGTTGTATTTAGCAGATACATCTGTTTTCCCCCGGAAAGAGGATGTCAAACCTCTCTCTGTGCTTAAAACCATTGCTAACTCAGAGCAAACTAAACAAAACAACCCATCAGAAAAAGTACCAAATCTCTCTGTTGATAACAATACTATTAAAGCAACAGATGTAAATAATCTTTTATCAAAGAGCAGCATTTGTTCATCTGAAAAAAAAATAGATAAGATTGTACAAGGTCCAGTTGGTGATAATTCAACTTCTGGTAAAGTACGTTCAAACAATCACTCAGAAAGGACATCAGTTTCATCAGCTGGTGCCAAAACTAGCACAAAAGAGTCAGGCCTTAAATCTGGTTGTATGAAGAGTGATAAAAGAAAATGGGCCTTGGAGGTTCTTGCGAGGAAAACAGCTGCCACAAGCGGGAACACGGCAAATGGAAATCCGGAAGACAATGCAGTTTTTAAAGGAAATTATCCTTTGCTTGCCCAATTGCCAATTGATATGAGACCAGTATTGGCACCTTGTCGCCACAATAAAATTCCTATATCAGTGAGGCAGACACAGCTTTACCGCCTGACAGAGCGCTTATTGAGGAACACAAATCTGGCTGTGATTCGCAGAACTGCAGATACAGAATTAGCTGTTCCAGATGCAATTAATATTGAAAAAGAGGTTGCTGACAGATCAAACAGCAAGCTTGTGTATTTGAACCTTTGTTCACAAGAGCTCTTGCATCGCGCAAATAACACAAAAACCAATGTAGCCACAGATACAAGTCCACCAGCCTCATCAGCAATGCTTACTGATCAACAATCGGAACTTAATACTGATGATCTTTCAACTGACCCTGAAGTTGAAACAGCCTTGAAAAATGCTGGTCTGTTGTCTGATTCCCCACCTAGCAGTCCACACGAGAACAGAGAAACATGTAATAGTGATATGTCGGGGCCCTGA 2970 0.4017 MEADFVTNDMLTLTQDAFDANDNDDAAVEGERCGICMDMVIDRGLLDCCQHWFCFVCIDNWATITNLCPLCQNEFQLITCVPVYDTIGNNKVEDDSFFRDDDWSIEEKNNTLSFPSYYIDENAVICLDGDGCKVRNGLATIEGDSDLDTSIACDSCDIWYHAFCVGFDTEGTSDSTWLCPRCVVDEVSKGTPNSVERTSVECNADNHNSNSECHAEDSFSGKVSVSVADTGETAVVVSMVDRTKWVPATSEKSLLPFEVGGDPMTESCILMSDTNNQQSVEVKTNTLPIMEEEELELSLSNNISCSVTSKSLVHNDLKKSVSGASNEPSGFDGTKLFDESHTKTSPSTIESDMGLHLGLSVGSFLSDKNETKDQATDVLCLSSEECFLKGDEIEANACKDNARVAGGKRKHADYSNEQVHIKADDGDVKPELPDEVALKKIRATGSQMTSTNDSADAHHLENAQKRPVLKHSPTKAIVKSDIMNIVKGTNRRHSKGRTVTNACDKLSENKGNMAGLRVKKIMKRVSDDGESSLVVQNLRKEIREAVRNKSSINFEDNHFDPKLLEAFRAAITGPKTELVNKLSPAAIKAKKSMLQKGKVRENLTKKIFGTSNGRRKRAWDRDCEIEFWKYRCMRATKPEKIETLKSVLDLLRKGSDSPESKQSSECQAKNPILSRLYLADTSVFPRKEDVKPLSVLKTIANSEQTKQNNPSEKVPNLSVDNNTIKATDVNNLLSKSSICSSEKKIDKIVQGPVGDNSTSGKVRSNNHSERTSVSSAGAKTSTKESGLKSGCMKSDKRKWALEVLARKTAATSGNTANGNPEDNAVFKGNYPLLAQLPIDMRPVLAPCRHNKIPISVRQTQLYRLTERLLRNTNLAVIRRTADTELAVPDAINIEKEVADRSNSKLVYLNLCSQELLHRANNTKTNVATDTSPPASSAMLTDQQSELNTDDLSTDPEVETALKNAGLLSDSPPSSPHENRETCNSDMSGP 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00399 989 SMART PHD_3 131 183 IPR001965 -
Pumo6g00399 989 ProSiteProfiles Zinc finger PHD-type profile. 65 185 IPR019787 -
Pumo6g00399 989 MobiDBLite consensus disorder prediction 924 954 - -
Pumo6g00399 989 Pfam Ring finger domain 32 72 IPR001841 -
Pumo6g00399 989 MobiDBLite consensus disorder prediction 320 349 - -
Pumo6g00399 989 PANTHER RING FINGER PROTEIN 41, 151 114 904 - -
Pumo6g00399 989 MobiDBLite consensus disorder prediction 924 989 - -
Pumo6g00399 989 Pfam PHD-finger 146 183 IPR019787 -
Pumo6g00399 989 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Pumo6g00399 989 MobiDBLite consensus disorder prediction 749 791 - -
Pumo6g00399 989 MobiDBLite consensus disorder prediction 752 788 - -
Pumo6g00399 989 MobiDBLite consensus disorder prediction 966 989 - -
Pumo6g00399 989 SUPERFAMILY RING/U-box 32 78 - -
Pumo6g00399 989 Coils Coil 535 555 - -
Pumo6g00399 989 SMART ring_2 123 182 IPR001841 -
Pumo6g00399 989 SMART ring_2 33 71 IPR001841 -
Pumo6g00399 989 SUPERFAMILY FYVE/PHD zinc finger 146 185 IPR011011 -
Pumo6g00399 989 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 183 IPR013083 -
Pumo6g00399 989 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 95 IPR013083 -
Pumo6g00399 989 ProSiteProfiles Zinc finger RING-type profile. 33 72 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00399 Pumo-Chr6 5107385 5114505 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00399 27 75 C3H Transcription Factor Family AT2G39100 32.692 4.91e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pumo6g00399 PHD 3e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00399 - - gmx:100808102 1796.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00399 6 5107385 5114505 Pumo6g00399 6 5107385 5114505 ECH