Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00394 ATGGACGATACCGAAACCAAAGATAGAATCGAGGAAACTGTTCGCAGGATTTTGCAAGAATCGGACATGGACGAGGTTACTGAGTCTAAGATTCGAAAGCTGGCCTCCGAACAGCTTGGCCTCGACCTGTCTCAGCCCCATTTCAAAGCCTTCGTGAAACAGGTTGTGAAGGCTTTTCTCCAAGAGAAGCAACGAGAAGAAGAAGAAAAACAGCAACAACAACAAGAGGAGGAAGAAGAAGAAGAAGAAGAACAGGGAGCTTCCAAGGGCAAGGAGTACGATGATGAAGGCGATCTCATCATTTGCAGGCTTTCAGATAAGAGAAGGGTGACGATTCAGGATTTCAGAGGGAAAACATTGGTCTCCATTCGGGAGTATTATAGAAAGGATGGCAAGGAGCTTCCTACTTCCAAAGGTAACTTTATGTTTTTTGTTTTCTTTAAGCTTTTTTTTTCGATTCTCCTCATTCTTTTTTGTAAAGGAAATTCGGTTTTGGATTGTGGGGGTCTGAAAGTTTTGATTGTTCTTTTGTTTCTCGAAATAGAATAG 549 0.4208 MDDTETKDRIEETVRRILQESDMDEVTESKIRKLASEQLGLDLSQPHFKAFVKQVVKAFLQEKQREEEEKQQQQQEEEEEEEEEQGASKGKEYDDEGDLIICRLSDKRRVTIQDFRGKTLVSIREYYRKDGKELPTSKGNFMFFVFFKLFFSILLILFCKGNSVLDCGGLKVLIVLLFLEIE 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00394 182 Gene3D - 2 63 - -
Pumo6g00394 182 SUPERFAMILY DEK C-terminal domain 3 61 - -
Pumo6g00394 182 Pfam Transcriptional Coactivator p15 (PC4) 102 139 IPR003173 GO:0003677|GO:0006355
Pumo6g00394 182 Gene3D Transcriptional Coactivator Pc4; Chain A 90 148 IPR009044 GO:0003677|GO:0006355
Pumo6g00394 182 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 4 61 IPR014876 -
Pumo6g00394 182 MobiDBLite consensus disorder prediction 66 92 - -
Pumo6g00394 182 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 4 139 IPR045125 GO:0003713|GO:0060261
Pumo6g00394 182 Pfam DEK C terminal domain 5 60 IPR014876 -
Pumo6g00394 182 Coils Coil 56 87 - -
Pumo6g00394 182 SUPERFAMILY ssDNA-binding transcriptional regulator domain 101 141 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00394 Pumo-Chr6 5074444 5076362 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Pumo6g00394 DEK_C 5.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00394 K25815 - gmx:100305633 207.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00394 6 5074444 5076362 Pumo6g00394 6 5074444 5076362 ECH