Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00388 ATGGGTGTTCCACAAACTCCAACCCCCTCTCCACATCTCTATCCACAAGAAATTCAACTTAAACTTTACCAAGCCTTCATATTCTCAATTCCCATACTCTTTTCCATTATTTTGGTTCTTTTGTTTTACTTGTTCTACCTCAAAAGGAGGGCTTCCTCTCTCTCATCACCACCTCTCCACATACTTCCCACTACTGCTAATCCACAAACTACATATCCTTATCCTTCACAACCTTGCCGTTTAGATCTGACAGTGCAATTTCTGGACAAACTTCCAAGAATTTTGTTTGATGAGGATTTAAGAACAAGAGATTCAGTATGTTGTGTTTGTCTGGGAGAATTTGAGCTGAAGGAAGAGCTGTTACAGATTCCTTATTGCAAGCATGTGTTTCATATAAGCTGCATAAGTAACTGGCTGCAATCAAACTCCACGTGTCCACTTTGTAGATGTTCCATCATTCCCTCTACCAAGTTCCTTAATCCAGCACCACCTATTGTATCAGACCCACCACAGCAACAAGTTGGTATTTCAGGCTCTTCATCACACATCGTGTCATTGCCTCATCAACAAGAAGAAGAAGTTGGTGCTTCCACAAATACTACCATTTTTCAAGGGAATGATGTATTTTAA 630 0.4016 MGVPQTPTPSPHLYPQEIQLKLYQAFIFSIPILFSIILVLLFYLFYLKRRASSLSSPPLHILPTTANPQTTYPYPSQPCRLDLTVQFLDKLPRILFDEDLRTRDSVCCVCLGEFELKEELLQIPYCKHVFHISCISNWLQSNSTCPLCRCSIIPSTKFLNPAPPIVSDPPQQQVGISGSSSHIVSLPHQQEEEVGASTNTTIFQGNDVF 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00388 209 SUPERFAMILY RING/U-box 85 158 - -
Pumo6g00388 209 PANTHER RING-H2 FINGER PROTEIN ATL16 13 172 IPR044600 GO:0016567|GO:0016740
Pumo6g00388 209 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Pumo6g00388 209 CDD RING-H2_EL5-like 107 149 - -
Pumo6g00388 209 FunFam Putative E3 ubiquitin-protein ligase RHA4A isoform A 76 154 - -
Pumo6g00388 209 Pfam Ring finger domain 107 149 IPR001841 -
Pumo6g00388 209 SMART ring_2 107 148 IPR001841 -
Pumo6g00388 209 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 154 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00388 Pumo-Chr6 5027936 5029772 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00388 3 195 C3H Transcription Factor Family AT4G10150 35.610 9.06e-35 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00388 K19039 - gmx:100806499 348.591