Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00364 ATGGGTCGTCGTAGAATTGAGATGAAGGAGGTGAAGGACCCCGCCACAAAACAAATTACATTTTCCAAGCGCAGAAGAGGCTTATTCAAAAAAGCGAATGAATTATCCATATTGTGTGGAATTGAAATTGCTGTTGCTGTGTTCTCCCCTGGAAACAAGCCTTTTTCTTTTGGACACCCAAGTGTCAATGCTGTTGCTTCCAAGTTTCTTCAGCAAGAGCCCAAATCAAATGTTGCCAAATCCAATGAAGTTGTTGACATGAATGGGCTAAACAAACAACTATGTGATGTTGAAGCCCAGATATGTGAGGAAAAAAATAAGACTATGAAGCTTGACATGTCGCTGAAACAACATGAAGTGACAAAAGCCTCTCAATATGAAGACTTGCAAGATTTCCATTGTAAGGTGAAGGACTATCTTGACGAGATGGAGGTATCAGAGTGTTTGCTGCTCCTTGCACAAGAACCAGTAGTGGGAATAACAAAACAAGTTCCTGCCAAAAAAAGGAGAAGGACATCCTTAGTAGCATGA 531 0.4087 MGRRRIEMKEVKDPATKQITFSKRRRGLFKKANELSILCGIEIAVAVFSPGNKPFSFGHPSVNAVASKFLQQEPKSNVAKSNEVVDMNGLNKQLCDVEAQICEEKNKTMKLDMSLKQHEVTKASQYEDLQDFHCKVKDYLDEMEVSECLLLLAQEPVVGITKQVPAKKRRRTSLVA 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00364 176 PANTHER MADS BOX PROTEIN 3 125 - -
Pumo6g00364 176 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Pumo6g00364 176 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pumo6g00364 176 Gene3D - 14 84 IPR036879 GO:0003677|GO:0046983
Pumo6g00364 176 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Pumo6g00364 176 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo6g00364 176 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677|GO:0046983
Pumo6g00364 176 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo6g00364 176 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo6g00364 176 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00364 Pumo-Chr6 4775690 4776220 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00364 1 154 Type I MADS-box Gene Family AT2G34440 34.503 4.55e-31 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pumo6g00364 SRF-TF 1.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00364 - - gmx:100784161 212.616