Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00356 ATGGGGATTTGCTTCAGCATTGAAGACCAAAACCACCTCTCCGTCTCCGATTCCAACGCGAAGCCTAAACCTGCAGGTCATGAATCTGGCACTCCATTGGCTTCCATGAATATCAAAGATCTCCGCGAAGGTGCTGGATACAGCAATGTGCATATTTTCACGTACGAGGAGCTTAGGCTAGCGACGAAGCACTTTCGTCCCGATTTCATTTTGGGAGAAGGAGGCTTCGGAGTTGTATATAAAGGCGTCATAGACCATAGCGTGAGGTCGGGTTACAAGGCCACTGAAGTCGCCATTAAGGAACTCAATCGCGAAGGATTTCAAGGCGATAGGGAATGGCTCGCGGAAGTTAACTATTTAGGTCAATTCAGTCACCCCAATCTGGTGAAGCTCATTGGATATTGCTGTGAGGACGACCACCGGTTATTGGTCTATGAATACATGGCAAGTGGGAGCTTGGAGAAACATCTTTTTCGCAGAGTGAGCTCAACATTGACTTGGTCAAAAAGAATGAAGATTGCTTTACATGCTGCAAGGGGGCTCGCTTTTCTTCATGGTGCAGAAAGGCCTATTATATATCGTGACTTCAAGACTTCAAATATCTTGCTAGATGCGGATTTCAATGCGAAGCTTTCAGACTTTGGCCTTGCAAAGGATGGCCCGATGGGGGACCAAACCCATGTTTCAACACGAGTAATGGGCACATATGGATATGCTGCTCCTGAGTATGTCATGACTGGGCATTTGACAGCTCGAAGTGATGTGTATGGTTTTGGGGTGGTGCTACTTGAAATGCTTATTGGTAGAAGAGCATTAGACAAGAGCAGGCCCAGCCGAGAGCACAACTTGGTTGAGTGGGCACGCCCGCTACTGAATCATAATAAGAAACTTTTGAGAATTTTAGACCCAAAACTAGAGGGACAATATTCAAGTAAAACTGCATTAAAGGTGGCCCATTTAGCTTACCAATGTCTTAGCCAAAACCCTAAAGGCAGACCGCTAATGAGCCAGGTTGTTGAAATTCTCGAAAACTTTCAGTCAAAGGGGGAAAATGAGGAAGATCAAATGCTTCAAACTGGCGGTAGCAGTATAACCCTTTATGAGGTTCCTAAGGGCAGCAATGACACTCCAATTTAG 1137 0.4565 MGICFSIEDQNHLSVSDSNAKPKPAGHESGTPLASMNIKDLREGAGYSNVHIFTYEELRLATKHFRPDFILGEGGFGVVYKGVIDHSVRSGYKATEVAIKELNREGFQGDREWLAEVNYLGQFSHPNLVKLIGYCCEDDHRLLVYEYMASGSLEKHLFRRVSSTLTWSKRMKIALHAARGLAFLHGAERPIIYRDFKTSNILLDADFNAKLSDFGLAKDGPMGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYGFGVVLLEMLIGRRALDKSRPSREHNLVEWARPLLNHNKKLLRILDPKLEGQYSSKTALKVAHLAYQCLSQNPKGRPLMSQVVEILENFQSKGENEEDQMLQTGGSSITLYEVPKGSNDTPI 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00356 378 PANTHER OS01G0588500 PROTEIN-RELATED 45 346 - -
Pumo6g00356 378 Gene3D Transferase(Phosphotransferase) domain 1 148 365 - -
Pumo6g00356 378 FunFam Probable serine/threonine-protein kinase PBL8 148 360 - -
Pumo6g00356 378 ProSitePatterns Protein kinases ATP-binding region signature. 71 100 IPR017441 GO:0005524
Pumo6g00356 378 CDD STKc_IRAK 71 345 - -
Pumo6g00356 378 MobiDBLite consensus disorder prediction 15 34 - -
Pumo6g00356 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Pumo6g00356 378 SUPERFAMILY Protein kinase-like (PK-like) 46 343 IPR011009 -
Pumo6g00356 378 ProSiteProfiles Protein kinase domain profile. 65 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00356 378 Pfam Protein tyrosine and serine/threonine kinase 71 342 IPR001245 GO:0004672|GO:0006468
Pumo6g00356 378 Gene3D Phosphorylase Kinase; domain 1 40 147 - -
Pumo6g00356 378 FunFam Serine/threonine-protein kinase BIK1 33 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00356 Pumo-Chr6 4648539 4654067 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00356 50 342 Glycoside Hydrolase AT3G07070 51.689 1.81e-102 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pumo6g00356 PK_Tyr_Ser-Thr 5.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00356 - - gmx:100800465 744.191