Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00351 ATGGCACTTCAGCCGGTTCCTTCTTTTGACACAGATGCGTTGTTAAGATCGGATATTTCTCTCAGGTCGAGTAAGCCACAACCTGAGTTTTTCTGTAAACAACTGACAGCAAGTGATACGAGTACTCATGGAGGTTTCTCTGTACCCCGCCGTGCTGCAGAGAAGATTTTTCCCCCACTTGATTACTCTGTGCAACCTCCTGCTCAAGAACTTGTGGCCCGGGATTTGCATGATAATGTTTGGAGATTCCGCCATATATATCGTGGACAACCAAAACGTCACTTGCTTACAACTGGATGGAGTCTATTTATCAGTGGAAAAAGGCTTTTAGCTGGAGACTCTGTTTTGTTTGTAAGAGATGAAAAGCAGCAGCTTCTTTTGGGTATAAGACGAGCTAACAGGCAACCCTCCAATTTATCATCTTCGGTACTATCAAGTGATAGTATGCACATTGGAATTCTTGCTGCAGCTGCTCAAGCTGTTGCAAACAATAGTCCCTTCACTGTGTTCTATAATCCTAGGGCTAGTCCCTCAGAATTTGTTATTCCTTTAGCCAAGTACTACAAGGCAGTGTATAGCCACCATATATCACCTGGTATGCGCTTCCGAATGATGTTTGAAACTGAAGACTCAGGAACAAGAAGATTTATGGGTACAATCATAGGTGTCAGTGATCTGGATTCTGTGAGATGGAAAAATTCACTATGGCGTAATTTGCAGGTTGGTTGGGATGAATCAACTGCTGAGGAAAGGCGAAGTAGGGTCTCGGTCTGGGAAATTGAACCCGTGACTACTCCATATTTCATCTGCCCACCTCCCTTCTTTAGATCCAAGAGACCTAGACTGGGAATGCCAGATGATGAGCCTGATTTCAACAACCTTTTCAAGAGTACAGTTCCTTGGCTTGGTGATGATATGTGCATAAAGGATCCCCAAGCTGCTCTCCCTGGCTTGAGCTTAGTTCAATGGATGAACATACAGCAAAATCCTGCTCTTGCTAGCTCATTGCAGCCAAATTGTGTGCCTTCCATGTCTGGATTGGTTCTGCAAAATCTTCCTGGTGCAGATATTGCAAATCAGCTGGGGTTTTCTACCCCACAAATCTCTCAATTAAACAATGTATCCGTCGATGCTCAGAATATACTTCAGACTTCCCAGCAACTTGATCACATTCAGAAGCTACCATGCCCATCCAGTGCATTGGGAGCAGTCACACAGCCGCTGCAGCAGTTGGGTGATATCACTCAACAACCAAGGAACTTGACAAATCAAACTTTACCACAGAATCAAGCTCACACCCAAGTTCTGAATCCCCAGAGAGTTGTCCAAACTAACAATATTCTTCAACAGCAACAATCGTCCATTCAAAACCATCAACTGCTTAGAAGCCTGTCTCAGAACCCACCTCAGCAAACTATATTGGGTCAGAATGAATGGCAAAATATGTTTCAATCCCCTATGCCTGATCATTTTAATCAACAATTACAGATGTCTGACAATCAGGTTCGGCTTCAGTTGTTACAGAAGCTTCAACAGCAACAACAGACACTCTTGGCACAGCAGTCTGCATTGCAGCAGCCTGCTCAAATTCAAATCCAAGACCAGCAGAGGCAGCTTTTAGATGTAGCAAACAACTCTAGTTCCCTAATTCCTGGTCAAGTACTGGAAAATCCTCCTATGCTTGAAAACTCACTCCCTGAGGCTAATTCTATCACCCATCAGATAACAATGCCTAGTAGCCAGAAAAATTTTCATTACTCTCATCTATCTCAGCAACCTGCCTTGCTGTCTGAAATGTCTGGCCATGTTGGACTTCCTGCTACAGTAACAACCAATCCACTTTCTGCTTCTGGTGGAAGTATACTGACTGGCGCAGGGCAATCAGTCATTACTGATGATGTTCCATCTTGTTCCACTTCACCTTCCACAAATAACCGTGCCAGTGCACTTCCTCCAGTGGTAAGTTCTCAGATCCATAGGAGCTCAACAATAGGGGATGACATGGCTCAGTCTGCTGTCACAATCTCGGGTCCAAGTACCCTAGAAACCATGTCATCTAATGCAAACATGGTAAAAGATGTACAGCCGAAGTATGAAGTAAAGCCTTCTTTAAATATTTCAAAAAATCAGAATCAAGGGAATGTTGCCCCTCAGACATACTTGAATGGTGTTGTCCAGACAGACTATTTGGATTCATCATCTTCTACAACATCACTTTACCATTTTCAGAGTGATACTCATATGCATCAGAATAACAACCCATTTTCTTACAATCCACAATTGATTTATTGTAGAGACAATAGTCAAAATGTTGAAGTTCAGGCTGATGCTAGGAGCAATGTTCCGTTTGGCAGTAACATTAATGGCCAAATGGGAATGCCATCGAATCTAGATTCTCTTTTAACCAAAGGCACAGTGGGGCTGGGGAAGGATTTGTCAAATAATTTCTCTTCCGGAGGCTTGCTTGGAGACTATGAAAATAATAAAGGTGTTCAGCCAGAACTTTCATCTTCAATGGTTTCACAGACGTTTGAAGTCCCTGATATGAGCTTCAATTCAATTGATTCTACAATAAATGGTAGTAGCTTCCTGAATAGGGGTCCATGGGATCTGCCGCCACCACCTCCACCTCCACCACCACCACCACCACCAACACCACCACCACCACCACAACAACAACAGATTCAACGGATGAGAACATACACCAAGGTATATAAACGTGGAGCTGTGGGAAGGTCCATAGACATAACACGATATTCAGGTTACGAGGAGCTTAAACAGGATCTGGCTCTTAGGTTTGGTATTGAGGGACAGCTGGAGGATCGACAAAGGATTGGTTGGAAACTTGTTTATGTAGATCATGAGAATGATGTTCTGCTTGTGGGAGATGACCCCTGGGAGGAGTTTGTTAACTGTGTCCGCTGCATTAAAATACTTTCTCCTCAAGAAGTTCAACAAATGAGCTTGGATGGAGATTTTGGCAATGTTGGCCTTCCATATCCAGCAGGCAGCAGCTCTGATGGCGAATTTGAAGAGCCAAAAGAAGAAAAGGTGGAAAAATTTGCTGCCCCCAATCTACCACTTACATTAAGGTTGTTAACCTGGAATGTCAGCCCTATGCCAAATAAAGGGCGAATGAAAATCAAAGAGAACAATAAAAGGACATCCTCCACCCAAGATCGCACTACCACCGCCTATGACAACGCCAGCGTCACCGTCCGTACAACGCCGCTGTCTTCATCTCGAAGAGCAAATCTAAGTTGTTCATCTGTGTTTGTTGTTGTGTTCTTGGATTGA 3297 0.4365 MALQPVPSFDTDALLRSDISLRSSKPQPEFFCKQLTASDTSTHGGFSVPRRAAEKIFPPLDYSVQPPAQELVARDLHDNVWRFRHIYRGQPKRHLLTTGWSLFISGKRLLAGDSVLFVRDEKQQLLLGIRRANRQPSNLSSSVLSSDSMHIGILAAAAQAVANNSPFTVFYNPRASPSEFVIPLAKYYKAVYSHHISPGMRFRMMFETEDSGTRRFMGTIIGVSDLDSVRWKNSLWRNLQVGWDESTAEERRSRVSVWEIEPVTTPYFICPPPFFRSKRPRLGMPDDEPDFNNLFKSTVPWLGDDMCIKDPQAALPGLSLVQWMNIQQNPALASSLQPNCVPSMSGLVLQNLPGADIANQLGFSTPQISQLNNVSVDAQNILQTSQQLDHIQKLPCPSSALGAVTQPLQQLGDITQQPRNLTNQTLPQNQAHTQVLNPQRVVQTNNILQQQQSSIQNHQLLRSLSQNPPQQTILGQNEWQNMFQSPMPDHFNQQLQMSDNQVRLQLLQKLQQQQQTLLAQQSALQQPAQIQIQDQQRQLLDVANNSSSLIPGQVLENPPMLENSLPEANSITHQITMPSSQKNFHYSHLSQQPALLSEMSGHVGLPATVTTNPLSASGGSILTGAGQSVITDDVPSCSTSPSTNNRASALPPVVSSQIHRSSTIGDDMAQSAVTISGPSTLETMSSNANMVKDVQPKYEVKPSLNISKNQNQGNVAPQTYLNGVVQTDYLDSSSSTTSLYHFQSDTHMHQNNNPFSYNPQLIYCRDNSQNVEVQADARSNVPFGSNINGQMGMPSNLDSLLTKGTVGLGKDLSNNFSSGGLLGDYENNKGVQPELSSSMVSQTFEVPDMSFNSIDSTINGSSFLNRGPWDLPPPPPPPPPPPPPTPPPPPQQQQIQRMRTYTKVYKRGAVGRSIDITRYSGYEELKQDLALRFGIEGQLEDRQRIGWKLVYVDHENDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSLDGDFGNVGLPYPAGSSSDGEFEEPKEEKVEKFAAPNLPLTLRLLTWNVSPMPNKGRMKIKENNKRTSSTQDRTTTAYDNASVTVRTTPLSSSRRANLSCSSVFVVVFLD 1098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00351 1098 MobiDBLite consensus disorder prediction 1043 1062 - -
Pumo6g00351 1098 CDD B3_DNA 30 122 IPR003340 GO:0003677
Pumo6g00351 1098 MobiDBLite consensus disorder prediction 868 893 - -
Pumo6g00351 1098 ProSiteProfiles PB1 domain profile. 899 983 IPR000270 GO:0005515
Pumo6g00351 1098 SMART B3_2 31 133 IPR003340 GO:0003677
Pumo6g00351 1098 MobiDBLite consensus disorder prediction 862 893 - -
Pumo6g00351 1098 SUPERFAMILY Formin homology 2 domain (FH2 domain) 874 882 - -
Pumo6g00351 1098 SUPERFAMILY DNA-binding pseudobarrel domain 21 159 IPR015300 -
Pumo6g00351 1098 ProSiteProfiles B3 DNA-binding domain profile. 31 133 IPR003340 GO:0003677
Pumo6g00351 1098 MobiDBLite consensus disorder prediction 633 653 - -
Pumo6g00351 1098 FunFam Auxin response factor 29 133 - -
Pumo6g00351 1098 Pfam Auxin response factor 157 240 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pumo6g00351 1098 Gene3D - 894 988 - -
Pumo6g00351 1098 Pfam B3 DNA binding domain 31 132 IPR003340 GO:0003677
Pumo6g00351 1098 FunFam Auxin response factor 195 267 - -
Pumo6g00351 1098 Gene3D - 195 266 - -
Pumo6g00351 1098 Gene3D - 29 132 IPR015300 -
Pumo6g00351 1098 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 526 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pumo6g00351 1098 FunFam Auxin response factor 894 988 - -
Pumo6g00351 1098 Pfam AUX/IAA family 896 984 IPR033389 -
Pumo6g00351 1098 SUPERFAMILY CAD & PB1 domains 912 977 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00351 Pumo-Chr6 4594000 4602407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00351 1 388 B3 DNA Binding Superfamily AT1G19220 66.496 8.79e-164 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pumo6g00351 AUX_IAA 3.3e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00351 - - gmx:100791531 1741.47