Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00349 ATGGAAGACTATGATAGGTACATAGCACAGAGTGACAAGGGTGAAAATGGAGTGATAGTGGCATCGCGTACTTGTTCGCGCGACGAATTTCGCCCTCGTGGTGGAAAAGTATTATCGCGAGTTGCTGCTGCTGCAAGAAACGGTTCTTCAACCTCAACATACGATATGGCTGTGACGAGGAATGTTAAGAAAAAGCAAAAGCGTAAAGGTCTTCAGGAGCTGTTTACAACCGATTACATTGTGAACAACGTCTTACGGAAGGATGGTCCTCCTCTGGGTCAGGAATTTGATTTTCTTCCTTCAGGACCCAAATATTTCACTTCTGCTTGTCAAGAGGACAGCCAAGGATCCTCTAAAAGGAGGAAGGTTTCCAACAGTGCAATTCGAAATCTCGCCGATTGTAATATGAAAGCACCTGTGAAGAAACATGGTATTGGCAAAGGTCTGATGACAGTTTGGAGGGCAACAAATCCTGATGCTGGAGACCTTCCAATTGGTTTTGGCGTTGCTGGCCAAGAAGTTTCTCTAATCTCAAATTCTATAGGACAGAAACCAGTCCGTGAGAACAACAGGTCATGGAAAACAGTAAACAGGAATGGAATGCCAAAAAATAAAATGCAGAATAAGAGAAATAAATCGCAGGATAAGAGGAAACTTACCATGCAAAGAAGAGTGGGGGAATTGAACCTAAATGTGACACAGAATCAGTCACCAAAGGAAAAATGTGAACTAGCTTTGGAGAGTGCAATATCTGAGGAGGGAGTTGATCGAGTTTCTATGTTATTTGATGATGAAGAGCTAGAGCTGAGGGAGTTACAAGAAAGAACCAGTCTGTTTATGTGTTCTGATCATCTTGCTGCCAGTGGAATGCTTGGCTGCTCGCTTTGTAAAGATGTGCTAGTGAAGTTTCCGCCAGATACCGTCAAGATGAAGAAACCTATCCATTTGCAACCGTGGGACTCGTCTCCAGAAATTGTGAAGAAATTATTTAAGGTTTTCCATTTCATCTATACATATGCTATAATTGTTGATATTTGTCCCTTCACTCTTGATGAGTTTGTTCAAGCATTTCATGATAAGGACTCAATGTTACTTGGCAAGATTCATGTGGCTCTTCTCACACTTCTTCTATCTGACATTGAAGTGGAGCTTACTAATGGGTTTTCACCTCATTTAAATAAATCATGTAACTTTCTTGCATTGCTTCACTCGGTTGAAAGTCAAGAATATTCCCTGGACTTCTGGAGAAGATCTCTAAATTCTCTTACTTGGATTGAAACACTCCGTCAGGTGCTGGTTGCTTCTGGATTTGGTTCAAAACAAGGTTCCTTACGTAGAGAGGTCCTTAGCAAGGAATTGAATCTTCTTGTAAACTATGGTCTATGCCCTGGCACCTTGAAGAGTGAGTTGTTTAACATCTTGTCAGAGAGAGGAAACATTGGATGCAAAGTAGCTGAGCTGGCAAAGTCAATGCAGATTGTTGAATTAAACCTTGCCAGCACAACAGAGGAACTTGAGTCTTTAATATGTTCCACGCTTTCAAGTGATATTACTTTATTTGAAAAGATTTCATCAACTGCATACCGATTGCGTATGAGCACTGTTATGAAGGACAGTGATGAATCTCATTCAGATACGGAGGACTCTGGTAGTGTTGATGATGAACTTAATGACACTGATACATGTAGCAGTGGTGACGATTTTGAAAGTGGTTCAATAAACTCCAGTATAAGAAAATTGAAGCGTGCAAACAGTCATAAAAATAATATGCTGAAAGTATACACTGAAATTGATGAGAGCCATCCAGGAGAGGTGTGGTTATTAGGACTGATGGAGAGTGAATATTCAGACTTGAACATTGAAGAAAAATTGAATGCATTGGCGGCTTTAACTGATCTTGTTTCATCTGGATCCAGCATCAGGATGAAGGATTCAACTAAAGTTACAGCTGATTGCAATTCTAGCATCCAATTACAAGGGTCTGGAGCTAAAATAAAGAGATCAGTAGTAAAGAAACCCGGGCCACTTTGGAACCAGAAAGTACACTTGAATTCTGATCCCTGTACAGTAGATTCCTCATCATTAATCTCAAGATTCCATAGTCATGAAGCTTCCTCTGAAAAGGGAAAAGGTTCATCTATTTCGCACCCCATTCAATCAGTGTTTTTGGGATCTGATCGTCGGTACAATAGATATTGGCTTTTCTTGGGCCCTTGTAATGTAGATGATCCAGGCCACAGGAGAATATACTTTGAATCTTCTGAAGATGGTCACTGGGAGGTTATTGATACTGAGGAGGCCTTGTGTGCCTTGTTGTCAGTTCTGGATGATAGAGGAAAACGGGAGGCTCTTCTTATTGAATCTTTGGAAAGGAGACAAACATCACTATGCAGATCTATGTCCAGGATTAATGTTAATAGTACTGGAATGGGTTCTATGTCACATTCTGATCAATCTGAACTGGATATGGTCACAGATGACAGTTATTCTCCAGCATCTGATGTAGACAACCTGAACCTGACTGAGACTGCTAAAGACTCTTTGCCGTCTGCTGGGGCTGTGGTAATTGAAGCTGGAAAGAAAGGAGAGGAACAAATTCAAAAATGGATCCGTGTTCAAGAATATGATTCTTGGATTTGGAATTCATTTTATTTAGATCTCAATGTTGTCAAATATGGTAGAAGGTCTTATCTGGACTCTCTTGCCAGATGTAAGAGTTGTCATGATCTATACTGGAGAGATGAGAGACACTGTAAAATTTGCCATATGACATTTGAGCTTGATTTTGATCTAGAAGAAAGATATGCAATCCACATAGCCACCTGCAGGGAGAAAGAAGACAGCAATACGTTTCCTAATCATAAAGTGCTATCATCACAGATTCAATCACTGAAAGCTGCAGTTTATGCTATTGAATCTGTTATGCCTGAAGATGCCCTGGTTGGTGCTTGGAGGAAGTCTGCTCATAAACTATGGGTGAAGCGGCTCAGACGCACCTCAACTTTGGTGGAGCTTTTGCAGGTTCTTGATGATTTTGTTGGTGCCATCAATAAGGACTGGTTGTTTCAATGCAAATTTCCGGATGGAGTGGTTGAAGAAATCATTGCATCTTTTGCATCTATGCCCCATACATCATCTGCCCTTGCTCTGTGGTTAGTGAAGTTAGATGCCATAATTGCTCCCTACCTGGACAGAGTCCATCCTCAGAAGAAGCAGGGAACCAGGCTAAAAATCATGTGTTCAACTGGTGCTTATAGTAGCCTTCTTTGCATGTGCTCAAACTATCTTAACTGA 3294 0.4092 MEDYDRYIAQSDKGENGVIVASRTCSRDEFRPRGGKVLSRVAAAARNGSSTSTYDMAVTRNVKKKQKRKGLQELFTTDYIVNNVLRKDGPPLGQEFDFLPSGPKYFTSACQEDSQGSSKRRKVSNSAIRNLADCNMKAPVKKHGIGKGLMTVWRATNPDAGDLPIGFGVAGQEVSLISNSIGQKPVRENNRSWKTVNRNGMPKNKMQNKRNKSQDKRKLTMQRRVGELNLNVTQNQSPKEKCELALESAISEEGVDRVSMLFDDEELELRELQERTSLFMCSDHLAASGMLGCSLCKDVLVKFPPDTVKMKKPIHLQPWDSSPEIVKKLFKVFHFIYTYAIIVDICPFTLDEFVQAFHDKDSMLLGKIHVALLTLLLSDIEVELTNGFSPHLNKSCNFLALLHSVESQEYSLDFWRRSLNSLTWIETLRQVLVASGFGSKQGSLRREVLSKELNLLVNYGLCPGTLKSELFNILSERGNIGCKVAELAKSMQIVELNLASTTEELESLICSTLSSDITLFEKISSTAYRLRMSTVMKDSDESHSDTEDSGSVDDELNDTDTCSSGDDFESGSINSSIRKLKRANSHKNNMLKVYTEIDESHPGEVWLLGLMESEYSDLNIEEKLNALAALTDLVSSGSSIRMKDSTKVTADCNSSIQLQGSGAKIKRSVVKKPGPLWNQKVHLNSDPCTVDSSSLISRFHSHEASSEKGKGSSISHPIQSVFLGSDRRYNRYWLFLGPCNVDDPGHRRIYFESSEDGHWEVIDTEEALCALLSVLDDRGKREALLIESLERRQTSLCRSMSRINVNSTGMGSMSHSDQSELDMVTDDSYSPASDVDNLNLTETAKDSLPSAGAVVIEAGKKGEEQIQKWIRVQEYDSWIWNSFYLDLNVVKYGRRSYLDSLARCKSCHDLYWRDERHCKICHMTFELDFDLEERYAIHIATCREKEDSNTFPNHKVLSSQIQSLKAAVYAIESVMPEDALVGAWRKSAHKLWVKRLRRTSTLVELLQVLDDFVGAINKDWLFQCKFPDGVVEEIIASFASMPHTSSALALWLVKLDAIIAPYLDRVHPQKKQGTRLKIMCSTGAYSSLLCMCSNYLN 1097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00349 1097 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 602 641 IPR028942 -
Pumo6g00349 1097 ProSiteProfiles DDT domain profile. 323 382 IPR018501 -
Pumo6g00349 1097 Pfam DDT domain 326 379 IPR018501 -
Pumo6g00349 1097 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 719 792 IPR028941 -
Pumo6g00349 1097 PANTHER HOMEOBOX PROTEIN SIX 214 1071 - -
Pumo6g00349 1097 SMART testlast3 323 382 IPR018501 -
Pumo6g00349 1097 Coils Coil 255 275 - -
Pumo6g00349 1097 MobiDBLite consensus disorder prediction 197 217 - -
Pumo6g00349 1097 MobiDBLite consensus disorder prediction 535 572 - -
Pumo6g00349 1097 MobiDBLite consensus disorder prediction 535 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00349 Pumo-Chr6 4568521 4578208 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00349 241 642 Homeobox Transcription Factor Family AT5G44180 27.811 2.64e-45 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Pumo6g00349 WSD 9.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00349 - - gmx:100792062 1992.24