Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00343 ATGGCGGGTGCCATGAATAAGAAGGTCGACAAGATTCGCCAAATCGTGCGTCTGAAACAGCTCATGACGCGGTGGAAGCACATCAGCCTCCGCCGCCGCTCCGACGGCCCCTCCGTCGCGTGCCGCCCTCCCTCCGGGTTCATCTTCGTCTACGTGGGCCCCGAACGCACGCGCTTCGCCATCCCCGCGCGCTTCCTCAACCTCGCCGTCTTCCACGGCCTCCTCAAACAAACCGAAGAAGAGTTCGGACTCCGAGGTAACGGCGGTTTGGTCCTCCCCTGCCAAGTCCCCTTCTTCTCTAACGTCGTTAAGTATCTCCACAAAGACGAACACAAGTACGGAAAGCTCTCTCTCCAAGACTTCGTTAACATGGTTTCCGACTCCTCCGATTCCTGCAAGGAAAACGTTCGTCGTTTTTGCCCCTCTGCTGCAGAAGGCAGAGTGAGCAAGCAGGAAGCACGGGAGTTAACTGATGTGAAATTATCCTAG 489 0.5685 MAGAMNKKVDKIRQIVRLKQLMTRWKHISLRRRSDGPSVACRPPSGFIFVYVGPERTRFAIPARFLNLAVFHGLLKQTEEEFGLRGNGGLVLPCQVPFFSNVVKYLHKDEHKYGKLSLQDFVNMVSDSSDSCKENVRRFCPSAAEGRVSKQEARELTDVKLS 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00343 162 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 31 101 IPR003676 GO:0009733
Pumo6g00343 162 Pfam Auxin responsive protein 17 106 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00343 Pumo-Chr6 4514906 4515841 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00343 8 122 Calmodulin-binding Proteins AT3G43120 29.139 7.20e-19 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00343 K14488 - gmx:100797463 249.21