Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00335 ATGGGGAGGAAGTGCTCACATTGTGGAATGATAGGCCATAATTCAAGGACCTGCACATCTTTGAGAGGGGCCAGTTTCGTTGGACTTCGCCTCTTCGGCGTGCAATTAGACACTTGCGGTGTTACCATCAAGAAAAGCTTTAGCATGGACTCCTTACCCTCTTCATCATCATCTTCCTCATCAAGAATAACCATTGATGAAAATTCTGACCGAACCTCTTTTGGCTATCTATCAGATGGTCTTTTAGGTCGAGCCCAAGAGAGGAAGAAAGGAGTGCCATGGACAGAAGAGGAACATAGAATATTCCTTGTTGGACTTGAGAAGCTGGGAAAGGGTGACTGGAGGGGAATCTCTAGAAACTTTGTGACTACAAGAACCCCAACACAAGTCGCAAGCCATGCTCAGAAGTATTTTCTTCGATTGGAAACTATAGATAAGAAGAAGCGACGTTCAAGTCTCTTTGACTTGCAGGTTGGTAGCAACAAACCCAACAACATAGCAGGTTCTAATTCAGTTTCGGCTCATCATCAAAATGATGAGTCTAAATGTGAAGTTAAGAATAATGATGCCACTTTGTCGTTGCTAGGGCGTATAACCTACTTTCAACAAGAAACCAAATCAGAAGAAACATTTGATAATTGCTCTTATGAAAATATTCAAGCACCAAGTGCAGAACATCAAGCTGCAGTTCTTAATCTGGATCTCACTCTTGCTGCAGCCCCCAAGGCAAAGACCCAGCTGCAGGAACAAAATAAACCATCCCCTTCTGGTCCATTCCTGCTTGGGCCAATTAGCGTCACTTAA 804 0.4341 MGRKCSHCGMIGHNSRTCTSLRGASFVGLRLFGVQLDTCGVTIKKSFSMDSLPSSSSSSSSRITIDENSDRTSFGYLSDGLLGRAQERKKGVPWTEEEHRIFLVGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKYFLRLETIDKKKRRSSLFDLQVGSNKPNNIAGSNSVSAHHQNDESKCEVKNNDATLSLLGRITYFQQETKSEETFDNCSYENIQAPSAEHQAAVLNLDLTLAAAPKAKTQLQEQNKPSPSGPFLLGPISVT 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00335 267 ProSiteProfiles SANT domain profile. 94 142 IPR017884 -
Pumo6g00335 267 MobiDBLite consensus disorder prediction 164 184 - -
Pumo6g00335 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 142 IPR017930 -
Pumo6g00335 267 CDD SANT 93 138 IPR001005 -
Pumo6g00335 267 ProSiteProfiles Myb-like domain profile. 86 138 IPR001005 -
Pumo6g00335 267 Pfam Myb-like DNA-binding domain 93 138 IPR001005 -
Pumo6g00335 267 Gene3D - 92 145 - -
Pumo6g00335 267 MobiDBLite consensus disorder prediction 244 267 - -
Pumo6g00335 267 NCBIfam myb-like DNA-binding domain, SHAQKYF class 89 140 IPR006447 GO:0003677
Pumo6g00335 267 FunFam transcription factor MYB1R1 92 143 - -
Pumo6g00335 267 SMART sant 90 140 IPR001005 -
Pumo6g00335 267 SUPERFAMILY Homeodomain-like 87 142 IPR009057 -
Pumo6g00335 267 PANTHER TRANSCRIPTION FACTOR KUA1 3 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00335 Pumo-Chr6 4399404 4400835 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo6g00335 Myb_DNA-binding 2.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00335 - - gmx:778093 406.371