Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00318 ATGGGAAGAGCTCCATGTTGTGACAAAGCTAGCGTGAAAAGAGGTCCTTGGTCTCCTGAAGAAGATGAAACCCTCAAAAACTATCTCAAGAAACATGGCACTGGTGGTAACTGGATTACTCTCCCACAAAAAGCAGGCCTTAAGCGCTGTGGGAAGAGTTGCCGTCTGAGATGGCTGAACTATCTCAGGCCTCATATCAAGCATGGAGGTTTCACTGATGAAGAAGACCAAGTTATCTGCACCCTTTATGCCACCATCGGAAGCAGGTGGTCCCTTATAGCTGCTCAGCTAACTGGGAGAACAGACAATGATGTGAAAAACCATTGGAACACTAAGTTAAAGAAAAAGTTTTTGGCAGCAAACACCAATGCCACTGGCAATACTGTTTGTCCACAGTTCTCAACTCCCACTCCTCAGCCTCAAGTTGAAGAGTGTGTCTATGATCATGAGAACTCAGCTGAGTCTCATGTTTTGGGTTTGGAGCAAACACCAATTTCAGTTCCTTCATCATTGCCTTTAGGATCAGATGTTTCAGGTCTTGGCAGCAGTTGTAGTGTACCACTACCCAATGATGTTTCAGTTCTTTCAAATTCAACTTCCTTGGTAAAAGAGGAGAATGAGCCACAATGGTTTGGCTATCATGACAATATTGAAGGTGAAGATGAAGCATTTTTGCTTGATTTTGTGTATGAAGATCTGCTGCATAATGGGTTTGTTTCTCAAGATAAAACCAGCGAAGTTGCCCCATCATTTGGCTAA 759 0.4335 MGRAPCCDKASVKRGPWSPEEDETLKNYLKKHGTGGNWITLPQKAGLKRCGKSCRLRWLNYLRPHIKHGGFTDEEDQVICTLYATIGSRWSLIAAQLTGRTDNDVKNHWNTKLKKKFLAANTNATGNTVCPQFSTPTPQPQVEECVYDHENSAESHVLGLEQTPISVPSSLPLGSDVSGLGSSCSVPLPNDVSVLSNSTSLVKEENEPQWFGYHDNIEGEDEAFLLDFVYEDLLHNGFVSQDKTSEVAPSFG 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00318 252 CDD SANT 71 113 IPR001005 -
Pumo6g00318 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Pumo6g00318 252 SMART sant 67 115 IPR001005 -
Pumo6g00318 252 SMART sant 13 64 IPR001005 -
Pumo6g00318 252 Gene3D - 70 132 - -
Pumo6g00318 252 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Pumo6g00318 252 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Pumo6g00318 252 Gene3D - 7 68 - -
Pumo6g00318 252 CDD SANT 16 62 IPR001005 -
Pumo6g00318 252 FunFam Transcription factor RAX3 7 68 - -
Pumo6g00318 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Pumo6g00318 252 PANTHER OS09G0431300 PROTEIN 1 147 - -
Pumo6g00318 252 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Pumo6g00318 252 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pumo6g00318 252 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00318 Pumo-Chr6 4227117 4228588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00318 1 133 MYB Transcription Factor Family AT4G37780 69.925 6.14e-71 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo6g00318 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00318 K09422 - gmx:778160 304.679