Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00317 ATGATGTTGGGGGAGACCCACCGCGCAAATCCAACCGTACACGTGCCACCGTGGCCGCTCCTCCACGATTCCACGCCGGAGATCTTTTCACCGTACGCCGGCAATGCTGATTACTCTCCGTACTCACTGCAAGAAGCATTGAGTGCGCTTCAGCACTATGATTCCACCGATGCTGAGTCAGACTCCGAGGTTCCCGAAGTCCCGGTGGACGCCTACTCCTGCGATCATTTCCGCATGTTCGAGTTCAAGGTTCGGAGATGCGCTCGTGGCAGGTCACATGACTGGACGGAGTGTCCGTACGCTCATCCCGGCGAGAAGGCTCGCCGCCGTGATCCCCGGAAGTATCATTACTCCGGCACGGCGTGCCCCGATTTTCGCAAGGGGAGTTGCAAGAAGGGTGACGCGTGCGAGTACGCGCATGGGGTTTTCGAGTGCTGGCTCCACCCCGCGCGTTATCGTACTCAGCCCTGCAAGGACGGGACCAGTTGTCGTCGGCGCGTGTGTTTCTTCGCGCACACGCCGGAGCAACTCAGGGTTTTACCGCAGCAGAGTCCACGGAGTGCTGATTCCTACGACGGGTCTCCTTTGAGACACGCGATTGAGTCTACATGCGCGAAGACGGTAGCGCCGTTCGTGTCTTCTCCTGGGTCGGTGTCGCCGCCGGTGGAGTCTCCGCCGATGTCGCCGATGTCGCCGATGACTCGTTCCGGGTCTGTGACTGTTAATGAGATGGTGGCTTCGCTGAGGAACTTGCAACTTGGGAAGGTGAAGTCGTTGCCTGCTTCTTGGAATGTTATGGGGTCTTCCGGGTTCGGGTCTCCTAGAGGACCCGTGATCCGACCCGGATTTTTCAGCCTTCCGACGACGCCGACGCAGGCTCCGGTTCGCGGCGGGGTCAACTATTTTGACCTGTGGGATCAGAGTTGCGAGGAGGAGCCCGTGATGGAGAGGGTGGAGTCTGGAAGAAACATAAGGGCGAGGATGTTTGAGAAATTGAGCAAGGAGAATTCCCTTGACGGGTCGGGTTCGGGTCAAATCGGAGCTCCGGATGTTGGGTGGGTTTCGGAACTTGTTAGTCGCTGA 1083 0.5863 MMLGETHRANPTVHVPPWPLLHDSTPEIFSPYAGNADYSPYSLQEALSALQHYDSTDAESDSEVPEVPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDACEYAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSADSYDGSPLRHAIESTCAKTVAPFVSSPGSVSPPVESPPMSPMSPMTRSGSVTVNEMVASLRNLQLGKVKSLPASWNVMGSSGFGSPRGPVIRPGFFSLPTTPTQAPVRGGVNYFDLWDQSCEEEPVMERVESGRNIRARMFEKLSKENSLDGSGSGQIGAPDVGWVSELVSR 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00317 360 FunFam Zinc finger CCCH domain-containing protein 66 74 142 - -
Pumo6g00317 360 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 121 141 IPR000571 GO:0046872
Pumo6g00317 360 ProSiteProfiles Zinc finger C3H1-type profile. 117 143 IPR000571 GO:0046872
Pumo6g00317 360 SMART c3hfinal6 116 142 IPR000571 GO:0046872
Pumo6g00317 360 SMART c3hfinal6 151 174 IPR000571 GO:0046872
Pumo6g00317 360 PANTHER UNKEMPT FAMILY MEMBER 44 358 IPR045234 -
Pumo6g00317 360 Gene3D - 117 180 - -
Pumo6g00317 360 MobiDBLite consensus disorder prediction 214 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00317 Pumo-Chr6 4205688 4207198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00317 61 229 C2H2 Transcription Factor Family AT5G12850 54.971 3.11e-59 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo6g00317 zf-CCCH 7.9e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00317 - - gmx:100808676 642.884