Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00312 ATGAATAAGATCAGCAACTTGAGCTGTGTGAGGAGCTCTGATCTCATAGATGCCAAGCTCGAAGAGCATCAACTGTGTGGATCCAAACAGTGCCCCGGTTGTGGTCACAAATTTGAAGGGAAGCCGGACTGGCTAGGTCTACCAGCGGGAGTGAAGTTTGATCCAACAGACCAAGAACTCATAGAACATCTTGAAGCCAAAGTAGAAGCAAAGAATATGAAATCACACCCTTTGATAGATGAGTTCATTCCCACTATTGAAGGAGAAGATGGGATTTGTTACACCCATCCTGAGAAACTTCCAGGAGTGACAAGAGATGGTTTAAGCAGACACTTCTTCCACAGGCCCTCGAAGGCATACACAACGGGGACACGAAAGAGGAGAAAGATTCAAAACGAATGCGACTTGCAAGGAGGGGAAACCCGGTGGCACAAGACAGGTAAGACCAGACCAGTGATGGTGAATGGGAAACAAAAGGGTTGCAAGAAGATTCTAGTGCTCTACACCAACTTCGGGAAGAACAGAAAACCTGAAAAGACCAACTGGGTCATGCACCAGTACCATCTTGGCCAGCACGAGGAAGAGAAAGAGGGAGAGCTTGTGGTCTCAAAGATATTCTACCAGACACAACCCAGGCAATGCAATTGGTCGGATAGAAGTGCCACAACCGGTGAAGCAAGTGGAGAACAACAACAACCTAACATTGGAAGAAGAGACAGTGGAAGTGGGAGTTGTTCCTCTAAGGAAATTGTTACTCACAGAGATGAAATGTCTGCTGTTGTTGGGGTCCCTCCTCCCCTAACAACCTTCAACACTGCCTTGGACATTCAACAACTCAAATCCGACCATTTTGGCTTCATTCCATTCAGAAAAAGCTTCGATGAGGTTGGAATAGGAGAAGCTTCCACAGCAAGAGAAGTAGTGCAAGCATCAGGGTCATGCGATGAAGTACATGAAGCACATCATCATCATCATCACCAAAATCAGCATGCGCACCAACAAATTGCAACCACAGCCTTCCATATCAGTAGGCCTTCGCTTCCCATCTCCACTATCATCTCTCCGCCACCCCTTCACCATGCTTCCATCATCCTAGACGACAACTCCTACCATGTCTCCAGAATAATGCTCCAAAATGAAAATTTCCAGCAACAGCAGCAACAACATCATAAACTAGGAGGAAGGTCTGCGTCGGGTTTGGAGGAACTCATCATGGGGTGCACTTCAACTGATATCAAAGAGGAGTCATCCATTACAAACCCACAAGAAGCTGAATGGTTGAAGTACTCTTCTTACTGGTCAGACCCTAGCAACCTGCAGGATCATCATGAGTAG 1335 0.4652 MNKISNLSCVRSSDLIDAKLEEHQLCGSKQCPGCGHKFEGKPDWLGLPAGVKFDPTDQELIEHLEAKVEAKNMKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSDRSATTGEASGEQQQPNIGRRDSGSGSCSSKEIVTHRDEMSAVVGVPPPLTTFNTALDIQQLKSDHFGFIPFRKSFDEVGIGEASTAREVVQASGSCDEVHEAHHHHHHQNQHAHQQIATTAFHISRPSLPISTIISPPPLHHASIILDDNSYHVSRIMLQNENFQQQQQQHHKLGGRSASGLEELIMGCTSTDIKEESSITNPQEAEWLKYSSYWSDPSNLQDHHE 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00312 444 ProSiteProfiles NAC domain profile. 47 208 IPR003441 GO:0003677|GO:0006355
Pumo6g00312 444 SUPERFAMILY NAC domain 43 208 IPR036093 GO:0003677|GO:0006355
Pumo6g00312 444 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 12 337 IPR044799 GO:0003700
Pumo6g00312 444 MobiDBLite consensus disorder prediction 215 248 - -
Pumo6g00312 444 FunFam NAC domain-containing protein 73 56 212 - -
Pumo6g00312 444 Gene3D NAC domain 56 212 IPR036093 GO:0003677|GO:0006355
Pumo6g00312 444 MobiDBLite consensus disorder prediction 215 250 - -
Pumo6g00312 444 Pfam No apical meristem (NAM) protein 48 189 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00312 Pumo-Chr6 4098258 4103967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00312 14 434 NAC Transcription Factor Family AT5G56620 54.788 1.52e-140 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo6g00312 NAM 2.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00312 - - gmx:100794811 797.349