Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00310 ATGGAGAACATCTGGATCCTGACTTTTCACCTTCTCCTCCTTTTGCTCCATCCAAATGCAGCAAAAGGGGCCATTAGTGTGGGTGTTGGTGGCAGAGGTGGCATAGGTGTTGGTATTGGCATTGGCAATGGGGGCAGTGGTGGTGGTGTTAACACCCCAGGGCCCTCTGGATCCTCAGTGTCAAACCTCAACAATGCCTTCACAGCACTCCAGGCATGGAAATCTGCCATCACTGATGACCCATTGAAGATTCTAGATACTTGGGTTGGTCCCAATGTGTGTTCCTACAAAGGTGTCTTCTGTGCAAATTCTCAGGATGATAATGGAATTGCCACAACAGCAGCAACTGAGTCTTCTATTGTTGCAGGAATAGATCTCAACCATGCAAATCTCCAAGGGACTCTTGTCAAAGAGCTCTCTTTGCTCTCTGATATCACTCTTTTCCATCTCAACAGTAACAGGTTTTCTGGCTCAGTTCCTGACACATTCAGAGACCTCACTTCACTCCAAGAGTTGGACCTCAGCAACAACCAACTCTCAGGCCCTTTTCCCATGGTCACTCTATCCATGCCAAACCTCATCTACTTGGACCTCAGATTCAACAACTTCTCAGGCCAGCTTCCTGATGAACTCTTCAACAAGAAACTTGATGCAATATTCCTCAACAACAACAACTTTGGAGGTGAAATTCCAGACAATTTGGGAAATTCACCTGCCTCAGTGATCAACTTGGCCAACAACAAGTTGAGTGGAAACATCCCTTTTAGCTTTGGCTTCATGAGTTCAAGACTAAAGGAGATTCTCTTCCTTAACAACCAGTTAACAGGTTGCATTCCCGAAGGAGTGGGGATCTTCACTGAGATGCAAGTTTTTGATGTGAGTTTCAACTCACTCATGGGCCATTTGCCTGACACAATGAGTTGCTTGGAAGATATAGAGGTTCTTAATTTGGCACATAACAAGCTTTCTGGGGAATTATCCAATGTGGTGTGCTCCTTGAGAAGCCTATTAAATCTAACCGTTGCTTACAATTTCTTCTCTGGGCTGAGCCAGGAATGTTCAAGGCTATTCAATGTGGGGTTTGATTTCTCGGATAACTGTATTCCTGGGAGGGATATGCAAAGACCACAGCCAGAGTGCTCTATGATCCCTGGTGGTAGTCTCAATTGTCTTAGAATTCCTACTCCAAAGCCTCTTGTTTGCGCTGCTCTGGGAGCAACTTTGTCTAAGCACACAAATTCACGTTCCTCTTCTCCCTGA 1260 0.454 MENIWILTFHLLLLLLHPNAAKGAISVGVGGRGGIGVGIGIGNGGSGGGVNTPGPSGSSVSNLNNAFTALQAWKSAITDDPLKILDTWVGPNVCSYKGVFCANSQDDNGIATTAATESSIVAGIDLNHANLQGTLVKELSLLSDITLFHLNSNRFSGSVPDTFRDLTSLQELDLSNNQLSGPFPMVTLSMPNLIYLDLRFNNFSGQLPDELFNKKLDAIFLNNNNFGGEIPDNLGNSPASVINLANNKLSGNIPFSFGFMSSRLKEILFLNNQLTGCIPEGVGIFTEMQVFDVSFNSLMGHLPDTMSCLEDIEVLNLAHNKLSGELSNVVCSLRSLLNLTVAYNFFSGLSQECSRLFNVGFDFSDNCIPGRDMQRPQPECSMIPGGSLNCLRIPTPKPLVCAALGATLSKHTNSRSSSP 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00310 419 Gene3D Ribonuclease Inhibitor 64 236 IPR032675 -
Pumo6g00310 419 SUPERFAMILY L domain-like 68 358 - -
Pumo6g00310 419 SMART LRR_typ_2 190 214 IPR003591 -
Pumo6g00310 419 SMART LRR_typ_2 142 165 IPR003591 -
Pumo6g00310 419 SMART LRR_typ_2 333 356 IPR003591 -
Pumo6g00310 419 SMART LRR_typ_2 166 189 IPR003591 -
Pumo6g00310 419 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 57 397 - -
Pumo6g00310 419 Gene3D Ribonuclease Inhibitor 237 358 IPR032675 -
Pumo6g00310 419 ProSiteProfiles Leucine-rich repeat profile. 168 189 IPR001611 GO:0005515
Pumo6g00310 419 Pfam Leucine rich repeat N-terminal domain 64 101 IPR013210 -
Pumo6g00310 419 PRINTS Leucine-rich repeat signature 169 182 - -
Pumo6g00310 419 PRINTS Leucine-rich repeat signature 309 322 - -
Pumo6g00310 419 FunFam Leucine-rich repeat extensin-like protein 1 67 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00310 Pumo-Chr6 4066258 4068171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00310 63 392 Leucine-rich Repeat extension Gene Families AT3G24480 49.702 7.71e-104 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00310 - - gmx:100786358 718.768