Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00302 ATGTCAAATTTGCATTTTATTTTCTATGGTTTAGTAGTTATTCTTCTTCTACAAAATCCCAGTGCAACACAATGCCATACCAAGGGAATTCGGCCTAAGCCAGGGAATGGTTTATCTACCAATATGACCAGAGCCCAATTTTCAGAACAACAGTTCATGAAATGGGTGAGATTTGTAGGTGGTCTCAAACATTCTGTCTTTAGGACAGCAAAGAATAAGCTTTTTCCTTCTCACACTTTGCACGTTTCTAAGAAGCATAGTAAAGGAGGCTTTTCGTCAATTCAAGCGGCCATTGATTCCCTTCCATTCATCAATGTGGTGAGAGTGGTAATTAAGGTGCATGCAGGGGTTTACACGGAGAAAGTTAACATTCCTCCCTTCAAATCCTTCATAACAATACAAGGAGAAGGTGCAGATAAGACCATTGTTCAATGGGGTGACACTGCTCAAAGCCAGCCATTAGGAACCTATGGTTCTGCAACTTTTGCTGTGAATTCACCTTATTTCATAGCCAAGAACATCACATTCAAAAACACTGCCCCAATTCCAGCACCAGGAGCAGTGGGAAAGCAAGGAGTGGCATTGAGAATTTCAGCAGATACAGCAGTATTCCTAGGCTGCAAATTCTTAGGAGCACAGGACACACTCTATGATCATATTGGTAGGCATTACTATAAGGACTGCTATATTGAAGGCTCTGTTGATTTCATATTTGGCAACGCTCTCTCTCTCTTTGAGGGATGTCACGTGCATGCCATAGCACAACTTACAGGGGCACTAACAGCCCAAGGAAGGAGCAGTTTATTAGAAGACACGGGATTCTCGTTTGTTCACTGTAAGGTCACGGGCTCAGGGGCACTTTACCTTGGAAGGGCTTGGGGTCCCTTTTCTCGCGTTGTCTTTGCTTACACTTACATGGACAACATCATCATTCCCAAAGGATGGTATAACTGGGGCGACCCTAACCGTGAAATGACTGTATTCTATGGACAATACAAATGCACAGGACCAGGAGCAAGCTACGCGGGGAGAGTATCATGGTCAAGGGAGCTCACTGATGAGGAAGCTAAGCCATTTATTTCACTTAGCTATATTGATGGCTCTGAATGGATCAATCTCTCTCTTTGA 1128 0.4344 MSNLHFIFYGLVVILLLQNPSATQCHTKGIRPKPGNGLSTNMTRAQFSEQQFMKWVRFVGGLKHSVFRTAKNKLFPSHTLHVSKKHSKGGFSSIQAAIDSLPFINVVRVVIKVHAGVYTEKVNIPPFKSFITIQGEGADKTIVQWGDTAQSQPLGTYGSATFAVNSPYFIAKNITFKNTAPIPAPGAVGKQGVALRISADTAVFLGCKFLGAQDTLYDHIGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQLTGALTAQGRSSLLEDTGFSFVHCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGPGASYAGRVSWSRELTDEEAKPFISLSYIDGSEWINLSL 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00302 375 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 73 372 - -
Pumo6g00302 375 Gene3D - 76 374 IPR012334 -
Pumo6g00302 375 SUPERFAMILY Pectin lyase-like 76 373 IPR011050 -
Pumo6g00302 375 ProSitePatterns Pectinesterase signature 2. 230 239 IPR033131 -
Pumo6g00302 375 FunFam Pectinesterase 76 373 - -
Pumo6g00302 375 Pfam Pectinesterase 85 367 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00302 Pumo-Chr6 3951647 3954941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00302 85 374 Carbohydrate Esterase AT1G05310 48.322 1.67e-100 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00302 K01051 - gmx:100802832 760.37