Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00301 ATGGGGAGAGCCATCAGGTGGTTGAAGGGGTTGTTTGGAATAAAGACAGACAGAGAGCGCAAAGAGAATTCAAATCCTGGCACCAAATGGTGTCACTCAGAAAGAGATTCCAGAGGTTTATGTCATAATCCAACCACCATTCCACCCAATATTTCACCTGCAGAGGCTGCTTGGCTGCAATCCTTCTACTCAGAAACTGAGAAGGAGCAGAACAAGCATGCCATTGCAGTTGCTGCAGCCACTGCAGCAGCCGCAGATGCTGCCATGGTTGCGGCTCAGGCTGCCGTTGCAGTGGTTAGGCTAACCAGTCAGGGCAACAGCAGAGACACCATGTTTGGTGGTGGACAAGAAAGGTTGGCTGTTGTCAAGATTCAAACTGTGTTTAGAGGGTATTTGGCAAGGAAGGCATTGAGAGCCTTAAAAGGATTGGTCAAGTTGCAAGGACTTGTGAGAGGGTACTTGGTGCGTAAGCAAGCAGCAGCAACCCTGCATGGTATGCAGGCTCTAATTAGAGCTCAAGCAACAGTAAGGTCTAAGAAATCTCGTGGACTCACTAGCAAAAAGAATGAAGCACATAGGTTTCAAACACAAGCACGAAGATCCATGGAGAGATTTGATGACATAAAGAGTGAGTACATAGCTCCCATCCACAGCAGAAGGCTATCATCTTCTTTTGATGCCACAATGAACAATGCAAACAGTGTTGATGGGAGCCCCAAAATAGTGGAAGTGGACACTGGTAGGCCAAAGTCAAGGTCTCGCAGGAGCAACACCTCAATGTCAGATTTTGGCGATGACCCATCATTTCAAGCACTTCCTTCTCCTCTCCCATTCGCTCATTTATCCATACCAAACCACAGGAATTACGATGACTCAGAATGGGGCTTAACAGGAGAAGAGTGCAGATTCTCTACGGCACAAAGCACTCCACGCTTCACCAATTCTTGTAGTTGTGGATCTGTTGTTGTTGCACCTATGACACCTAAAAGTGTTTGCACCGAAAACTTCTTCTATGGGCAGTACCACAATTTTCCAAACTACATGGCCAACACTCAGTCTTTCAAGGCCAAATTGAGGTCTCATAGTGCTCCAAAGCAACGCCCGGATCCAGGTCCAAAGAAGAGGCTTTCCCTCAATGAGATGATGGAGTCTAGGAGTAGTTTAAGTGGGGCTAGAATGCAAAGGTCTTGCTCACAGATTCAAGAAGCTATTAATTTTAAGAATGCTGTGATGAGTAAGCTTCACAAGTCCACAGAACTTGGTAGGGACACAGACATGAACTTTTCCAACCAGAGGAGGTGGTGA 1305 0.4651 MGRAIRWLKGLFGIKTDRERKENSNPGTKWCHSERDSRGLCHNPTTIPPNISPAEAAWLQSFYSETEKEQNKHAIAVAAATAAAADAAMVAAQAAVAVVRLTSQGNSRDTMFGGGQERLAVVKIQTVFRGYLARKALRALKGLVKLQGLVRGYLVRKQAAATLHGMQALIRAQATVRSKKSRGLTSKKNEAHRFQTQARRSMERFDDIKSEYIAPIHSRRLSSSFDATMNNANSVDGSPKIVEVDTGRPKSRSRRSNTSMSDFGDDPSFQALPSPLPFAHLSIPNHRNYDDSEWGLTGEECRFSTAQSTPRFTNSCSCGSVVVAPMTPKSVCTENFFYGQYHNFPNYMANTQSFKAKLRSHSAPKQRPDPGPKKRLSLNEMMESRSSLSGARMQRSCSQIQEAINFKNAVMSKLHKSTELGRDTDMNFSNQRRW 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00301 434 PANTHER IQ-DOMAIN 5-RELATED 1 385 - -
Pumo6g00301 434 MobiDBLite consensus disorder prediction 183 200 - -
Pumo6g00301 434 MobiDBLite consensus disorder prediction 180 200 - -
Pumo6g00301 434 MobiDBLite consensus disorder prediction 357 376 - -
Pumo6g00301 434 Pfam Protein of unknown function (DUF4005) 310 393 IPR025064 -
Pumo6g00301 434 MobiDBLite consensus disorder prediction 230 267 - -
Pumo6g00301 434 ProSiteProfiles IQ motif profile. 141 168 IPR000048 GO:0005515
Pumo6g00301 434 Pfam IQ calmodulin-binding motif 120 138 IPR000048 GO:0005515
Pumo6g00301 434 Pfam IQ calmodulin-binding motif 144 158 IPR000048 GO:0005515
Pumo6g00301 434 ProSiteProfiles IQ motif profile. 117 145 IPR000048 GO:0005515
Pumo6g00301 434 SMART iq_5 116 138 IPR000048 GO:0005515
Pumo6g00301 434 SMART iq_5 139 160 IPR000048 GO:0005515
Pumo6g00301 434 MobiDBLite consensus disorder prediction 362 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00301 Pumo-Chr6 3945239 3948086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00301 1 393 IQD Protein Family AT3G16490 52.764 3.45e-100 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00301 - - gmx:100800892 700.279