Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00289 ATGCGTGTGCCATCAACAAAACTTACATTTTCCTCACACGTGTCGCTTTCTCATCTCTCCTTTCTGCTCCTTTTATCGCCTTCTCGCTTCTTTCTCTTCACCCCTCCACTCTCAACTCTCAACTCTCAACTACGACACCGTTGCGCTATGGAGGAGGACGAGCAACTCGAGCGATTCGACTCCGAGTTCGCGTCCACCAGTTCCATTTTTTCCACACTCAGCACCGACGATTTCCGGAACCTCACCAGCTCCGGCGACATTTCCTCCATCAGCAGCGGCTCCGGCGAGATTCCGCCCGTCGCGGTCACCGAGGCGGTCCTCGCGCAGCCGTTGCTCCACCGCCCGGGGTCCAATGAAGGCGAGGCTGCGGCGGCGGCGGCGACGGAGAAGTGCGTGGGAAGGAGTAACAAGGGAGTGAGTTGGGGACACACTTCGGTGATTGGGAGAAGGAAAGAGATGGAGGACGCCGTCGCCGTTATTCCGGGATTCATGTCTCGCACGTGCGATCACGTCGGCGGTTGTACGGCTCCCGGTTCTAGATCCTCCGGCGAGATCGCTCCTGTTCATTTCTTCGGCGTTTACGACGGCCACGGTGGCTCTCAGGTGTATGTGCAACAGAATTTCAAGGTGAGTTGTGTGGGGGAAAAAAGGGGAGCCCATAAAATAGCGTTGGTGCAGGAGTTTAGTTCACCCGAAAATGAGATAAACTTTTTAATGGTGGCAAAGTTTTGTGCGAAGCGGATGCACGATGTTATAGCAGAGGAGTGGGACCGAGAAATGGGAAGTGGCACTGAATGGCAGAGAAGATGGGAAGCCGTATTTGCTAACAGTTTTGAGAGGACTGACAATGAAATCCTATCAGACGCAGTAGCACCAGAAATGGTAGGATCTACTGCCTCTGTGGTGCTTCTATCCGGTTGCCAAATTATTACATCCAACTGCGGCGACTCAAGGGTAGTTCTTTGCCGCAGGACACAAACAATTCCCTTGACTGTGGATCAAAAGCCGGATAGACAAGATGAACTCTTGAGAATTGAAGGAGGAGGAGGAAAAGTCATAAACTGGAATGGAGCTAGGGTGTTTGGTGTTCTTGCCATGTCCAGGGCCATAGGTGATCGGTACTTGAGGCCATGGATTATTCCGGTGCCAGAGATAACTTTTACAGCAAGAACTGAGGAGGATGAGTGCTTAGTTTTGGCAAGTGATGGACTTTGGGATGTAATGACCAATGAAGAGGTTGGAGAAGTAGCACGCCACATTCTTAGAAGGCGCCGCAGATCATTGTCAATGGAGGAAACATCTCCTGCACAAGTTGTTGCCAACAGCCTGACTGAAATTGCATATGGTAGAAATAGTATAGATAACATTTCAATCATAGTTGTTGATCTGAAATCAAAGAGAAAACGTCAGCAAAGGCCTCCTTTAATTTCCTAA 1434 0.5049 MRVPSTKLTFSSHVSLSHLSFLLLLSPSRFFLFTPPLSTLNSQLRHRCAMEEDEQLERFDSEFASTSSIFSTLSTDDFRNLTSSGDISSISSGSGEIPPVAVTEAVLAQPLLHRPGSNEGEAAAAAATEKCVGRSNKGVSWGHTSVIGRRKEMEDAVAVIPGFMSRTCDHVGGCTAPGSRSSGEIAPVHFFGVYDGHGGSQVYVQQNFKVSCVGEKRGAHKIALVQEFSSPENEINFLMVAKFCAKRMHDVIAEEWDREMGSGTEWQRRWEAVFANSFERTDNEILSDAVAPEMVGSTASVVLLSGCQIITSNCGDSRVVLCRRTQTIPLTVDQKPDRQDELLRIEGGGGKVINWNGARVFGVLAMSRAIGDRYLRPWIIPVPEITFTARTEEDECLVLASDGLWDVMTNEEVGEVARHILRRRRRSLSMEETSPAQVVANSLTEIAYGRNSIDNISIIVVDLKSKRKRQQRPPLIS 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00289 477 SUPERFAMILY PP2C-like 239 464 IPR036457 -
Pumo6g00289 477 Pfam Protein phosphatase 2C 238 456 IPR001932 -
Pumo6g00289 477 ProSitePatterns PPM-type phosphatase domain signature. 190 198 IPR000222 GO:0043169
Pumo6g00289 477 SUPERFAMILY PP2C-like 134 202 IPR036457 -
Pumo6g00289 477 ProSiteProfiles PPM-type phosphatase domain profile. 140 463 IPR001932 -
Pumo6g00289 477 PANTHER PROTEIN PHOSPHATASE 121 463 IPR015655 GO:0004722|GO:0006470
Pumo6g00289 477 CDD PP2Cc 142 463 IPR001932 -
Pumo6g00289 477 Gene3D - 129 473 IPR036457 -
Pumo6g00289 477 SMART PP2C_4 130 461 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00289 Pumo-Chr6 3817842 3824869 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00289 141 473 PP2C-type Phosphatase Gene Family AT4G26080 44.759 3.61e-91 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00289 K14497 - gmx:100793293 658.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00289 6 3817842 3824869 Pumo6g00289 6 3817842 3824869 ECH