Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00288 ATGGGTCGTCGTAAGATTGAAATTGCAACGGTGAAGGATCCTAATACAAGGCAAGTCACATTTTCCAAGCGTCGAACGGGCTTATTCAAAAAGGCGAATGAATTATCCATCTTGTGTGGTGCAGAAATTGCTATTGTTGTGTTCTCCATTGGAAACAAGCCTTACTCTTTTGGGCACCCGGGTGTTGATGCTGTTGCAGCCAAGTTTCTTCAACAAGCGGCCAATTCAAACAATGCCAAACAAAATGATGCCCAAGGAAACAACCCATCTAATGAACTTGGCGACATGAATAGGTTGAATCAACAATTGTCTGATGTTCAAGCCCAAATACTTGAGGAAGAAAAGAAGGGTGCAGAGCATGATGAGAGACTAAAACAACACGAAATGACACAACTCTCTCAATATAAGAAATTGCAAGGTTCATATGTAGAGCTCCAACATAGGGTGAAGGACTATATTGATGCAATCGAGGTGTCGGAGTATATGATACTCCTTGCACAAGAACCGGTGGTTGGAATAACAAAACAAGTGACTCTAAAGAAAAGAAAAAAGAATTGA 558 0.4086 MGRRKIEIATVKDPNTRQVTFSKRRTGLFKKANELSILCGAEIAIVVFSIGNKPYSFGHPGVDAVAAKFLQQAANSNNAKQNDAQGNNPSNELGDMNRLNQQLSDVQAQILEEEKKGAEHDERLKQHEMTQLSQYKKLQGSYVELQHRVKDYIDAIEVSEYMILLAQEPVVGITKQVTLKKRKKN 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00288 185 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Pumo6g00288 185 Gene3D - 14 85 IPR036879 GO:0003677|GO:0046983
Pumo6g00288 185 PANTHER MADS BOX PROTEIN 3 135 - -
Pumo6g00288 185 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo6g00288 185 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo6g00288 185 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo6g00288 185 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pumo6g00288 185 SUPERFAMILY SRF-like 1 75 IPR036879 GO:0003677|GO:0046983
Pumo6g00288 185 Coils Coil 96 116 - -
Pumo6g00288 185 MobiDBLite consensus disorder prediction 76 96 - -
Pumo6g00288 185 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Pumo6g00288 185 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00288 Pumo-Chr6 3811981 3812538 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00288 1 167 Type I MADS-box Gene Family AT2G34440 39.227 6.38e-36 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pumo6g00288 SRF-TF 1.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00288 - - gmx:100791127 326.25