Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00287 ATGGGTCGTCGTAAGATTGAGATTGCGGAGGTGAAGGACTCCAACACCAAGCAAGTTACATTTTCAAAGCGTCGAACAGGTTTGTTCAAAAAAGCAAATGAATTATCTATTTTGTGTGGAGCAGAAGTTGCTATTGTTGTGTTCTCTCCTGGGAACAAGCCTTACTCTTTTGGGCACCCAAGTGTTGATATTGTTGCAGACAAATTTCTCCAGCTAGAGCCTAAATCAAATGTTGCCAAACCAAATGATGTCCAAGGAACATCTGATGGAGTTGGTGACATGGATAGGCTGAATCAACAACTATCTGATGTTCAAGCCCAATTACTTGATGAGCAAAAGAAGACTGCGGAACTTGATAAGAGATTGAAACAACGAGGAGTGACACAACTTCCTCAAAATAAAGAATTGCAAGATTCATATTTAGGGATCCAACAAAAGGTGAAGGACTATTTTGATGCAATCGAGGTGTCAGAGTATATGTTGCTCCTTGCAAAAGAACCAGTGGTCGGAATAGCAAAACCAATTGCTACAAAGAAAAGAAGAAGGAATTGA 552 0.4004 MGRRKIEIAEVKDSNTKQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGNKPYSFGHPSVDIVADKFLQLEPKSNVAKPNDVQGTSDGVGDMDRLNQQLSDVQAQLLDEQKKTAELDKRLKQRGVTQLPQNKELQDSYLGIQQKVKDYFDAIEVSEYMLLLAKEPVVGIAKPIATKKRRRN 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00287 183 Gene3D - 14 83 IPR036879 GO:0003677|GO:0046983
Pumo6g00287 183 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pumo6g00287 183 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo6g00287 183 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677|GO:0046983
Pumo6g00287 183 Coils Coil 94 114 - -
Pumo6g00287 183 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Pumo6g00287 183 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Pumo6g00287 183 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo6g00287 183 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo6g00287 183 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pumo6g00287 183 PANTHER MADS BOX PROTEIN 3 132 - -
Pumo6g00287 183 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00287 Pumo-Chr6 3798631 3799182 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00287 1 122 Type I MADS-box Gene Family AT3G66656 47.581 4.89e-34 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pumo6g00287 SRF-TF 1.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00287 - - gmx:100790601 280.026