Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00279 ATGGCTGAGCTACCGAGCTCAGAAGCATCATCATCCGCTTCCACTCGCAAGCACTCGTCTTCGGAGGCCCATTTAGCCGGCCCGGATCAGAAAAAGGCCAAGCAGGCCCGAGATAGCAGCAGCAAGCACCCCGTCTACAGAGGGGTCCGAATGCGGGCCTGGGGGAAGTGGGTATCCGAAATCCGCGAGCCCAGAAAGAAGAACCGGATCTGGCTCGGCACCTTCGCCACCGCCGAGATGGCGGCGCGTGCACACGACGTGGCGGCGCTCGCCATCAAAGGCAACTCCGCCATTCTCAACTTCCCCGAACTCGCGGGCTCCCTGCCCCGACCGGACTCCAACTCGCCAAGAGACGTCCAAGCCGCCGCCGCCAAAGCCGCTGCCATGGAGGTTAACGAGACTCCGACGACGCCGTCTTCGTCGTCGGCGTCGCTGTCGCAGTCGTCATCTTCGTCGTCATTGGCGGTGTCTTCGGACCCGTCGACGCCGGAGGAGCTGGGGGAGATAGTGGAGCTGCCGAGCCTGGGAACGAGTTTCGAAATACCCGACCCGAGCGGGGAGTTGGTGTTTTCCGACCCGGTGGACGGGTACCCGTGGTGTCACGGCATTTATGATGAGAGGGACTGTGGAGGGTATTTTATTTGGGATCAGATTTCAATGCAGGACTCAGAGAGCATGATTCTTTGTGGGTTTGAGGGTTCATTGTGGCAGCATTAA 717 0.6039 MAELPSSEASSSASTRKHSSSEAHLAGPDQKKAKQARDSSSKHPVYRGVRMRAWGKWVSEIREPRKKNRIWLGTFATAEMAARAHDVAALAIKGNSAILNFPELAGSLPRPDSNSPRDVQAAAAKAAAMEVNETPTTPSSSSASLSQSSSSSSLAVSSDPSTPEELGEIVELPSLGTSFEIPDPSGELVFSDPVDGYPWCHGIYDERDCGGYFIWDQISMQDSESMILCGFEGSLWQH 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00279 238 CDD AP2 46 104 IPR001471 GO:0003700|GO:0006355
Pumo6g00279 238 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Pumo6g00279 238 Pfam AP2 domain 44 94 IPR001471 GO:0003700|GO:0006355
Pumo6g00279 238 MobiDBLite consensus disorder prediction 131 165 - -
Pumo6g00279 238 FunFam Ethylene-responsive transcription factor 2 44 103 - -
Pumo6g00279 238 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 21 178 - -
Pumo6g00279 238 MobiDBLite consensus disorder prediction 132 160 - -
Pumo6g00279 238 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Pumo6g00279 238 Gene3D AP2/ERF domain 45 103 IPR036955 GO:0003700|GO:0006355
Pumo6g00279 238 MobiDBLite consensus disorder prediction 22 45 - -
Pumo6g00279 238 MobiDBLite consensus disorder prediction 1 21 - -
Pumo6g00279 238 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Pumo6g00279 238 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Pumo6g00279 238 MobiDBLite consensus disorder prediction 1 45 - -
Pumo6g00279 238 SUPERFAMILY DNA-binding domain 45 103 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00279 Pumo-Chr6 3693253 3694662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00279 4 195 AP2-EREBP Transcription Factor Family AT5G11590 60.714 3.26e-60 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pumo6g00279 AP2 6.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00279 K09286 - gmx:100778201 344.354