Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00263 ATGTCTGAGGCATTGGAAGAGGTTCCTTCAATGAAAGGAGGGCGTGAAGAAGGTTTGAACCTGAAGGCCACTGAGCTGAGGCTTGGATTGCCAGGGTGTGAGTCACCAGAGAGGGAGGGTGTGTTTAAGAGTGTGGTGGTGTCTGGGGCCAAGAGGGGCTTCTCTGATGCCATTGATGGAAACTGGAATGGTGGATCTGAAGTGGGTTTGGGAAAAGATACTGCCTTGTTCTCTCCAAGGGGTGTTAGTGTTAGTGCTGCCAAGTCTCTCACTCTCACTGCAACAGACTGCACCAACAAACCAACTGCTTTGGGTGCTTCTGTTCTCAAGGAAACTGTTCCACACTCTCCAAAACCATTGCATGACAAAAAGCCACAGATTTCTGCTCCAGCTGCAAAGGCGCAGGTTGTGGGATGGCCACCAATCCGTTCTTTCAGGAAGAACTCAATGGCTTCTCAGCCTCAGAAGAACGATGCTGCTGATGCAGAAGCCAAGTCTGGATGCCTTTATGTAAAAGTCAGCATGGAAGGCGCCCCATACTTGAGGAAAGTGGACCTGAATAGTTTTACCACTTACAAGGAACTCTCTTTGGCACTTGAAAAGATGTTTAGTTGTTTTACACTCAGTCAATGCGGCTCTTATGGGGTTTCTAGTCGAGAAAATTTAAGTGAAAGTAGATTGATGGATCTCCTTCATGGTTCAGAATATGTTCTTACCTATGAAGACAAGGATGGCGATTGGATGCTAGTTGGTGATGTTCCTTGGGAGATGTTCACTGAGTCTTGCAAGAGGCTGAGGATAATGAAGAGTTCTGAAGCAATTGGGCTAGCACCTAGAGCCATGGAAAAGTGCAAAAGTCGCAACTAG 867 0.4706 MSEALEEVPSMKGGREEGLNLKATELRLGLPGCESPEREGVFKSVVVSGAKRGFSDAIDGNWNGGSEVGLGKDTALFSPRGVSVSAAKSLTLTATDCTNKPTALGASVLKETVPHSPKPLHDKKPQISAPAAKAQVVGWPPIRSFRKNSMASQPQKNDAADAEAKSGCLYVKVSMEGAPYLRKVDLNSFTTYKELSLALEKMFSCFTLSQCGSYGVSSRENLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCKRLRIMKSSEAIGLAPRAMEKCKSRN 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00263 288 SUPERFAMILY CAD & PB1 domains 166 269 - -
Pumo6g00263 288 ProSiteProfiles PB1 domain profile. 168 270 IPR000270 GO:0005515
Pumo6g00263 288 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 19 275 IPR003311 GO:0005634|GO:0006355
Pumo6g00263 288 FunFam Auxin-responsive protein 163 280 - -
Pumo6g00263 288 Gene3D - 162 282 - -
Pumo6g00263 288 Pfam AUX/IAA family 24 279 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00263 Pumo-Chr6 3507822 3512460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00263 172 278 B3 DNA Binding Superfamily AT4G23980 30.841 6.85e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pumo6g00263 AUX_IAA 3.1e-85 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00263 K14484 - gmx:100778529 526.939