Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00260 ATGAATAGAGGTGTTTTGCAAAGCTCACCGGTGCAACAAATGATGGCCGGGAACCCTAACAACTGGTGGAACATCAACACCATGCGCCCTCCTCCTCCTCCTTTCTTCTCCACTCCTTCCAACTTTCTAACTCCTTATACCCCCACTTCTTCTTCTCTTCCTCTTCCTTCTTGGCATGACAACAATCAAGAGCTACCTGAGTCATGGAGCCAGCTACTCATGAGTGGGGTGGTGTCTGAAGAAGAGAAAGGGGGTATGTGCCAGGTTCAGTCCAAGAAGTTGGAGAACTGGGAGCAACAAATGCTAAGTCAGACTCCAAGTGCTCCTATTGTTGATGTTAAGCAAGAAAGCTCGGTGAACAGCTATGTGTATGGGCATGGAAACGAAGAGTTTCAAGCAGCAAAGCCAACATGGTCTCAAATAGTGCCTGCTTCTTCTCCCAAATCCTGTGTAACAAGTTTCAGCAGCAGCATGTTGGATTTCTCTAACAATAACACCGATGCGAGGCCTCCTCCACCAGATCCATCCTCTGAGTGTAACAGTACTGCAACTGGTGGGGCATTCAAGAAAGCTAGGGTTCAACCGCCCACAACTCAGTCGACCTTCAAGGTTAGGAAGGAAAAATTAGGTGACAGAATTACAGCCCTTCATCAACTCGTTTCCCCATTCGGAAAGACTGACACAGCGTCTGTCTTATTAGAAGCTATTGGGTATATCAGATTCCTTCAGAGTCAAATTGAGGCCCTTAGTTTACCATACTTGGGCAGTGGATCAGGAAACATGAGGCACCAACAATCTGTTCAAGGAGAGAAGAATTGTATATTCCCTGAAGACCCCGGTCAGTTGCTGAACGATAACTGTTTGAAGAGGAAAGCAGCTAGTGAGCAGGTAATTGTTCAGTGA 903 0.4662 MNRGVLQSSPVQQMMAGNPNNWWNINTMRPPPPPFFSTPSNFLTPYTPTSSSLPLPSWHDNNQELPESWSQLLMSGVVSEEEKGGMCQVQSKKLENWEQQMLSQTPSAPIVDVKQESSVNSYVYGHGNEEFQAAKPTWSQIVPASSPKSCVTSFSSSMLDFSNNNTDARPPPPDPSSECNSTATGGAFKKARVQPPTTQSTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGSGSGNMRHQQSVQGEKNCIFPEDPGQLLNDNCLKRKAASEQVIVQ 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00260 300 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 203 253 IPR036638 GO:0046983
Pumo6g00260 300 MobiDBLite consensus disorder prediction 161 199 - -
Pumo6g00260 300 CDD bHLH_AtbHLH_like 201 250 IPR045239 -
Pumo6g00260 300 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 193 242 IPR011598 GO:0046983
Pumo6g00260 300 FunFam transcription factor bHLH68 isoform X1 200 253 - -
Pumo6g00260 300 Gene3D - 200 253 IPR036638 GO:0046983
Pumo6g00260 300 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 80 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00260 Pumo-Chr6 3457744 3461475 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00260 1 282 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 45.580 9.26e-74 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00260 - - gmx:100785156 540.421