Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00259 ATGACCACCGTAACGGTCACCACGCGAGCTCAGATCCTCCGCCACACCGCCGCATTCACCTCCTCCGTCCTGTCGCAATCCGAACTCCGGCGCCGCCTCATCGCGACTCTCCTCCGCGACACCCCTCTCTCCGACCAAAAACACCTGAACCTCGCCGCCGACACTCTAGAGAGCGCGATCTCGTTCTCGAGCCCCGCTCTTCGCTCCTCGTCCCTCTCCCTCGCGGAGAAGCTCCTCCTCCCTCTCCCGGACTTCCCCCTCTCCTCGCTCCTCCTCTCCCTCATCCACGCCCTCCGTAACCGCCCTACCGAATCCGCCGTTAGCCTCCTCCGAATCTTCCACTCCAACAACAGCAACAACGCTTCCCTCGCCCGATCCGAAATCGCTCCCGCGCTCTACGAGCGCCTCTTCTCTCTCCACCTCTTCCCCGTCTTCCGCTGGTTCGATGAACAGAGGACGCGGATTCTCTCCTCCACTTCTTCAACCTCCAGCCGCCATGAAAACGATTATTCCGTAACTTTGGTTTCGGAGGAGTACTCCGTGTTGCTGCCTTGTGCGAAGGTGTTGTCGAAGATGAGCGAGGAGCAGGCCGCGAAGCTCAGGGAGGTGGAGAGACAGTACGAAGAGGTTCTCAACGAGAACTGCAGGGTTCTCGCCGTGTACTTCAAAGAGGTTTTGGTTAATGAAAACGGTGACGCGGCGATTAGTCCACCGTCGTTGATACTGAAGAGCGCCGCTGAAGGTGGCGGCAGCGGCGGCGGGGAGAACAGAAAGGAGGAGATGATGCAAATGAGTAGTGTGTTGGAGAACGGACGGTATAATCCAATGTGGTCGGAAAGGGAAGAATCTATTGAATTTTTGAGCCCCAGTTCCAGCAACAGATCTTCCCACGCGCCATTTTATCCTCAGAGAGTCTTTTCCAGAATCCAAAAACCTTCAAAAACTTTGACAACGCCAGTCTATTTAAACTCAACCGCTGAAACTGATTTTTCCTTAGACGAGAGTTTGCTTAGTTCTTCTTCAGATTCTGAGGCAGAAAATGAGGAAAAGGACAAAACTATTGCATTGTTGGAGCCTCGACAAAGCCAAATTCAAGAACAAATGCTAACCATCTTCAAACAATCCAGGAGTTCCCCTGATTATCCTATGGCAGACTTCGATACCCCGCTGCATGGAATCGGAAAACATGCACCTCCCAAGGACTTTGTCTGTCCAATAACAAGTCACGTATTTGATGATCCAGTGACTCTTGAGACTGGTCAGACATATGAACGCAAAGCTATCGAGGAATGGTTCAATAGAGGGAACTTAACTTGTCCCATCACTCGCCAGAAGCTGCAAAACACCCAGCTACCCAAAACAAATTATGTGCTCAAACGACTAATTGCAAGCTGGAAAGATCGCAACCCCCATTTGGTCCCACCGCCGTATGAGGAGGGTCCATACGAAGATACTGAGGCAGTTGTGAAGTCAACAATGCCTTCAACTTCTCCTAATAGCGTTATAACACAAGCCACCGTTGATGGGATGATGAGTGAGTTACGCTGTGCAATCAATAACCTGTATATGTCAGAGGTTCTCCAGGAATCTGAAATGGCCGTGCTTCAAATTGACAAGTTCTGGAGAGGAGTGGATCTAGGAGTGGATATACATAGAATGCTATCAAAACCTGCGATAATCAATGGATTAATGGAGATCCTTTTCAATTCTGTTGAGCCTCAGGTGCTACAAGCAGCAGTTTTCCTTCTGGCCGAGATGGGGTCTAGAGACAATGCTGTTGTTAAGACCCTTACACGTGTGGACACTGACGTGGAATGTATCATGGCTCTTTTCAAGAACGGGTTGACAGAGGCTGTTGTGCTGTTGTATCTCTTAAATCCTTCCACTATGAGTCTTGCAGAGATGGCCATAGTGGAGTCTCTAATATCAATTTTCAATAAGAAAGAGGAAGACTTGGTTAAGATGTGTTTAAAGCCCAAAACAGCTGCAGTGCTTTTACTTGCACGGATTATTGGTAGCAGTGAAGAGATAATTGCATCTTCGGTTGTCAATACCCTTTTCTCAGAAAAAGCAATTGGAACCATTGTCGGCAGTTTGGGAGCTGACTTGGCAAAGGAGAGGATTGCTGCAGTGGAGATCTTGTTAAGATGCATGGAAGAAGATGGGACATGCAGGAACAACATTGCCGATAAAGCAGAGTTGTCACCTCTTTTGGAAACCTTAATCGGTGCAACTGATGGAGATCGATTTAAGATTATTAAATTCTTTTCCGAGTTAGTCAAATTAAATAGAAGGACATTCAATGAACAAATCCTCCACATTATAAAGGAAGAAGGACCTTTTAGTACAATGCATACTCTCCTTATTTATTTGCAGACAGCCCTTCAAGATCAATGTCCAGTTATGGCTGGCCTCTTACTCCAACTTGATCTTCTGGTTGAGCCAAGAAAAATGAGCATATACCGGGAAGAGGTGATGGATACTCTTATTTCATGCCTGAGAAACACAGATTTCCCCATTACCCAATTAGCAGCTGCTGATACAATTATGTCACTGCAAGGGAGTTTTGACTTCTCTGGAAACCCTCTAACCAGAGAAGTCCTTCTTAAACGTGTAGGTATCGACAAAAGTTCCAGAAGACTTGTACAGGTGGATCAGATCAACGACTTCAGCCCAGAAATTGATATAACTCCAGAAGAAGAGAAGGCAGCTGATGATTGGGAAAGAAGAATTGCATCTGTTCTAGTAAGCCATGAGTTTGGCACTCTTTTTGAGGCTTTAGCAGATGGCATGAAGAGCCGAAATCCAGAACTACGATCAGCATGCTTTATATCAGCTACATGGCTCGTATACATGTTGACCATTCTGCCAGATACAGGGATACAAGTAGCAGCTCGTGCCTGCTTTCTAAAGCAGTTCATAATTAAATTAAATTCTGCTAAGGATGTAGAAGACAGAATCCTTTCTATGCTTGCTCTCAATAGCTTTCTTCATTTCTCTGACGGCTTAGGTGATCTAACTTCCTACACTAAGGATATCATAAAAGGGTTGAGAGAGCTAAAGAGATCCTGTCCCTTAGCATCTAAAATGCTAAAGGTTCTGGTTGAAGAAAATGAATCTAAAAAGGACATTTGGATACATAAAGAGCTCATAAAAGAAGACTGCAGCGAGAATGGAGAGGTGCTGTCTGTCATTTGCTTTAAGGACAAATTTTTTTCAGGCCATACAGATGGCACTATTAAGGTCTGGATATTAAAGGATAACTTATTCCATCTCTTGCAAGAGATCCAAGAACATACTAAGGCTGTGACAAACTTGGTGATTTCAGAATCCGATGACAGGCTATACAGTGGTTCACTTGACCGAACTGCAAAGGTCTGGTCTATTGGAAAGGCAGCAATACATTGTGTACAGGTGCATGATATGAAGGACCAGATTCATAACCTAGTTGTAACCAATAGCTTAGCTTGTTTCATTCCGCAGGGGGCTGGTGTCAAGGTTCAGTCATTGAATGGAGAATCAAAGTTGTTAAATTCTAGTAAATATGTGAAGTGCTTGGCTCATGTTAATGGGAAATTATACTGTGGATGCCATGACAGTAGTGTTCAGGAGATACATTTGGCCACTGGAACAATCAGCACTATTCAAAATGGCTATAAAAGATTACTTGGGAAAGCAAATCCTATTCATGCACTGCAAATTCATGGTGAACTTATATATGCAGCTGGCTCTTCCTTGGATGGATCTGCTCTAAAGATATGGAACAATTCCAATTACAGTATGGTTGGATCACTGCAAACGGGATCTGAAGTGCGGGCTATGGCAGTGAGCTCAGAATTGATTTATTTGGGGTGCAAAGGAGGTACTGTGGAAATTTGGGATAAGAAGAAACACAATAGAGTTGACACGTTGCAAATGGGTACGAATTGTAGGGTTAATTGCATGGCTCTAGACAGCAATGAAGAAGTTTTGGTAATTGGAACCTCAGATGGACAGATTCAGGCTTGGGGAATGAATTAA 4020 0.4525 MTTVTVTTRAQILRHTAAFTSSVLSQSELRRRLIATLLRDTPLSDQKHLNLAADTLESAISFSSPALRSSSLSLAEKLLLPLPDFPLSSLLLSLIHALRNRPTESAVSLLRIFHSNNSNNASLARSEIAPALYERLFSLHLFPVFRWFDEQRTRILSSTSSTSSRHENDYSVTLVSEEYSVLLPCAKVLSKMSEEQAAKLREVERQYEEVLNENCRVLAVYFKEVLVNENGDAAISPPSLILKSAAEGGGSGGGENRKEEMMQMSSVLENGRYNPMWSEREESIEFLSPSSSNRSSHAPFYPQRVFSRIQKPSKTLTTPVYLNSTAETDFSLDESLLSSSSDSEAENEEKDKTIALLEPRQSQIQEQMLTIFKQSRSSPDYPMADFDTPLHGIGKHAPPKDFVCPITSHVFDDPVTLETGQTYERKAIEEWFNRGNLTCPITRQKLQNTQLPKTNYVLKRLIASWKDRNPHLVPPPYEEGPYEDTEAVVKSTMPSTSPNSVITQATVDGMMSELRCAINNLYMSEVLQESEMAVLQIDKFWRGVDLGVDIHRMLSKPAIINGLMEILFNSVEPQVLQAAVFLLAEMGSRDNAVVKTLTRVDTDVECIMALFKNGLTEAVVLLYLLNPSTMSLAEMAIVESLISIFNKKEEDLVKMCLKPKTAAVLLLARIIGSSEEIIASSVVNTLFSEKAIGTIVGSLGADLAKERIAAVEILLRCMEEDGTCRNNIADKAELSPLLETLIGATDGDRFKIIKFFSELVKLNRRTFNEQILHIIKEEGPFSTMHTLLIYLQTALQDQCPVMAGLLLQLDLLVEPRKMSIYREEVMDTLISCLRNTDFPITQLAAADTIMSLQGSFDFSGNPLTREVLLKRVGIDKSSRRLVQVDQINDFSPEIDITPEEEKAADDWERRIASVLVSHEFGTLFEALADGMKSRNPELRSACFISATWLVYMLTILPDTGIQVAARACFLKQFIIKLNSAKDVEDRILSMLALNSFLHFSDGLGDLTSYTKDIIKGLRELKRSCPLASKMLKVLVEENESKKDIWIHKELIKEDCSENGEVLSVICFKDKFFSGHTDGTIKVWILKDNLFHLLQEIQEHTKAVTNLVISESDDRLYSGSLDRTAKVWSIGKAAIHCVQVHDMKDQIHNLVVTNSLACFIPQGAGVKVQSLNGESKLLNSSKYVKCLAHVNGKLYCGCHDSSVQEIHLATGTISTIQNGYKRLLGKANPIHALQIHGELIYAAGSSLDGSALKIWNNSNYSMVGSLQTGSEVRAMAVSSELIYLGCKGGTVEIWDKKKHNRVDTLQMGTNCRVNCMALDSNEEVLVIGTSDGQIQAWGMN 1339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00259 1339 Gene3D - 1037 1163 IPR015943 GO:0005515
Pumo6g00259 1339 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1305 1339 - -
Pumo6g00259 1339 SUPERFAMILY WD40 repeat-like 1069 1336 IPR036322 GO:0005515
Pumo6g00259 1339 SUPERFAMILY ARM repeat 33 1021 IPR016024 -
Pumo6g00259 1339 CDD RING-Ubox_PUB 399 451 IPR045210 -
Pumo6g00259 1339 ProSiteProfiles U-box domain profile. 397 472 IPR003613 GO:0004842|GO:0016567
Pumo6g00259 1339 ProSiteProfiles Trp-Asp (WD) repeats profile. 1096 1129 IPR001680 GO:0005515
Pumo6g00259 1339 Coils Coil 701 721 - -
Pumo6g00259 1339 Pfam WD domain, G-beta repeat 1093 1128 IPR001680 GO:0005515
Pumo6g00259 1339 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 1338 - -
Pumo6g00259 1339 SUPERFAMILY RING/U-box 397 475 - -
Pumo6g00259 1339 SMART WD40_4 1089 1128 IPR001680 GO:0005515
Pumo6g00259 1339 SMART WD40_4 1297 1337 IPR001680 GO:0005515
Pumo6g00259 1339 SMART WD40_4 1215 1255 IPR001680 GO:0005515
Pumo6g00259 1339 SMART WD40_4 1047 1084 IPR001680 GO:0005515
Pumo6g00259 1339 SMART WD40_4 1258 1294 IPR001680 GO:0005515
Pumo6g00259 1339 ProSiteProfiles Trp-Asp (WD) repeats profile. 1305 1339 IPR001680 GO:0005515
Pumo6g00259 1339 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1096 1129 - -
Pumo6g00259 1339 Gene3D - 1164 1339 IPR015943 GO:0005515
Pumo6g00259 1339 SMART Ubox_2 401 465 IPR003613 GO:0004842|GO:0016567
Pumo6g00259 1339 Coils Coil 193 213 - -
Pumo6g00259 1339 Pfam U-box domain 399 469 IPR003613 GO:0004842|GO:0016567
Pumo6g00259 1339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 398 473 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00259 Pumo-Chr6 3438866 3446202 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00259 399 487 U-box Gene Family AT1G71020 42.697 1.41e-17 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00259 - - gmx:100808867 2277.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00259 6 3438866 3446202 Pumo6g00259 6 3438866 3446202 ECH