Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00255 ATGGATCCTCCACCGAAGAGCTGGAGCATCCATACCCGATCCGAGATCATCGCCAAATACGAGGTCATGGAGCGGGTCGGGTCCGGAGCTTACGCCGACGTCTACCGCGGCCGTCGCCTCTCCGACGGCCTCACCGTCGCCCTCAAGGAAATCCACGACTACCAGTCCGCGTTCCGCGAAATCGACGCCTTGCAGCTCCTCCAGGGCTCCCCAAACGTCATCGTTTTGCACGAGTACTTCTGGCGCGACGACGAGGACGCCGTTCTCGTCCTCGAGTTCCTCAGGACCGACTTGGCCACCGTCATCGCCGACGCCGCCAAGGCCAACCAGCCTCTCCCCGCCGGCGAGCTCAAACGCTGGATGATCCAGATTCTCTCCGGCGTCGACGCCTGTCACCGCCACATGGTCCTCCACCGAGATTTGAAGCCATCTAATCTCTTAATTTCCGAACACGGCCTCCTCAAGATCGCCGACTTCGGACAGGCAAGGATTCTCACGGAGCCTGCTATTGATGCTTCTAATAATCACGAAGAATATTCTAGAGTTTTAGATGACATTGACAATAAGGATACTATTATTAGCACTCACGATGGGAGTGCAATATGCACAGCAAGTGACGGAGATAGGGAAGAGGAAGATAAAGAACTTGGTTGTTTCACGTCATGCGTTGGGACTCGTTGGTTTAGGGCTCCTGAGTTGCTTTATGGATCCAGAGACTACGGTTTGGAGGTTGATTTGTGGTCCTTGGGATGTATCTTTGCAGAACTTTTAACTCTGCAACCTTTGTTTCCTGGAACTGCTGATGTTGACCAGCTTAGTAGAATAATTGGTGTTTTGGGTAACCTTGATGAGAGTGCTTGGGCTGGTTGTTCTAAACTTCCTGATTATGGGATAATCTCCTTTAGCAAGGTGGAGAACCCTGCTGGTCTTGAAGCTTGTTTGCCCAATCGGTCCCCTGATGAACTGGCTCTGGTGAAAAGACTGGTTTGTTATGATCCTGCTAAGAGGGCTACGGCGATGGAGCTGCTTCATGATAAGTACTTTAGTGAAGAGCCTCTTCCTGTTCCAGTTTCTGAGCTGCGAGTTCCTCTGACCAGAAAAGGGCAAGATGATGATTCCCTTGGTGGATGGGGTGATTTCGATGAAATGGATTCTGATTCTGATTTTGACGAGTTTGGCCCTCTGAATATCACAAGGACTGGTACCGGTTTCTCCATACAGTTTCCTTGA 1230 0.5122 MDPPPKSWSIHTRSEIIAKYEVMERVGSGAYADVYRGRRLSDGLTVALKEIHDYQSAFREIDALQLLQGSPNVIVLHEYFWRDDEDAVLVLEFLRTDLATVIADAAKANQPLPAGELKRWMIQILSGVDACHRHMVLHRDLKPSNLLISEHGLLKIADFGQARILTEPAIDASNNHEEYSRVLDDIDNKDTIISTHDGSAICTASDGDREEEDKELGCFTSCVGTRWFRAPELLYGSRDYGLEVDLWSLGCIFAELLTLQPLFPGTADVDQLSRIIGVLGNLDESAWAGCSKLPDYGIISFSKVENPAGLEACLPNRSPDELALVKRLVCYDPAKRATAMELLHDKYFSEEPLPVPVSELRVPLTRKGQDDDSLGGWGDFDEMDSDSDFDEFGPLNITRTGTGFSIQFP 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00255 409 Gene3D Transferase(Phosphotransferase) domain 1 107 351 - -
Pumo6g00255 409 Pfam Protein kinase domain 20 168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00255 409 Pfam Protein kinase domain 215 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00255 409 PANTHER CELL DIVISION PROTEIN KINASE 19 354 - -
Pumo6g00255 409 Gene3D Phosphorylase Kinase; domain 1 11 106 - -
Pumo6g00255 409 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Pumo6g00255 409 ProSiteProfiles Protein kinase domain profile. 20 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00255 409 FunFam Cyclin-dependent kinase F-1 11 105 - -
Pumo6g00255 409 SUPERFAMILY Protein kinase-like (PK-like) 13 354 IPR011009 -
Pumo6g00255 409 SMART serkin_6 20 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00255 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00255 Pumo-Chr6 3417798 3421096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00255 4 409 Core Cell Cycle Gene Families AT4G28980 57.053 0.0 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Pumo6g00255 Pkinase 4.9e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00255 - - gmx:100801952 781.171