Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00254 ATGGGGGAAGGTGAAGGTGAAGGTGAGGGGAGTGATGGCGCTCCAAAGAATGTTGTGTCAAACGACGTCGTTGCGAATGCGCTGTTGCCGTCCGATGTTCCCTCCAAGAAGCTTGCCAGGCAGCTCGATTTCACCGCCTTCGGAGGGATGCCGGCGACGCCGCAGCCGCAGCCACCGGTGGTTTTGCCGCTGCCGCCTTCTGCTTCCGTCAGGGTTGGGAAACCAGAATCTCCAAAATCGAGATCGAGGCCTGGCTTTGAAATTAAAGAAGCTACTCCGAAGAAGCAGAAGCAGTGCAACTGTAAACATTCAAAATGCTTGAAGCTATATTGTGAATGTTTTGCTTCGGGAATATATTGTGACGGTTGCAACTGTGTAAATTGTTATAACAATGTTGAAAATGAAGCTGCTAGACGAGAAGCGGTTGAAGCTACTTTAGAACGGAATCCAAATGCGTTTAGGCCAAAAATAGCGAGTAGCCCTCATGGAACACGTGATAGCAGGGAGGATGCTGGGGAAGTTTTGATATTGGGAAAGCACAACAAGGGATGCCATTGTAAAAAATCTGGGTGCCTCAAGAAGTACTGTGAGTGCTTCCAAGCCAACATTCTTTGTTCTGAAAATTGTAAATGCATGGATTGCAAAAACTTTGAGGGAAGTGAAGAGAGACAGGCTTTGTTCCATGGAGATCAAAATAACAACATGGTGTATATTCAGCAGGCGGCCAATGCTGCCATAACTGGAGCTATTGGTTCCTCTGGCTATTCTTCACCACCAATATCAAAGAAAAGAAAAGGTCAAGAACTCTTACTTGGGCCAACTGTCAAGGATCCATCAGTTGGCAGGCTGGGACAACAGGCAAACAATGTCAGAGTTCCTGCACCCTCCTCATCCTTGTCACCTATCCCAGGTGCTCGAGTTGGATCAGCAACAATAGGTCCTTCAAAATTAATGTACAGGTCTCTTTTAGCAGACATCATACAACCACAGCACCTGAAGGAACTTTGCTCAGTTCTGGTGCTAGTATCTGGACAAGCCGCTAAGACATTTACAGACCAGAAAAATTTAATGGATAAGCATGCAGAAGATCAGACAGAAACTTCTCTTGCTTCTTCAACTCAGGAGCAATTGCCAAGCCAAAAGGAAGCTAATGTTGAGAAACCTGTGGCTGATGATGATTGTTCGAGTGCAAACCAGACAGATAAAATCAGCCCGGATAATTCTTGTTCAGATGGTGCTGATGTCCCAAAAGGGAGGCCAATGTCTCCTGGAACTTTAGCATTGATGTGCGATGAGCAAGATACAATGTTCATGACTGCTGCCTCCCCTGTCGGATCAAGGGCACATGCTTGCAACACATCTTTGCAACCACCTTATGGACAAGGAACAACAGAGGTCTATGCAGAGCAAGAAAGGATTGTATTGACGAAATTTAGAGATTTTCTCAATAGGGTTATCACTATGGGAGAAATAAATGAAACGAAGTGTTCTTCATTAGCCAGAAGTGAATTAGAGAGTCAAAAGGACCCAAACATCAATTGCACTGGAAATGCCAGTACTGAGACAGCGCATCAGCAGGGAGCCACTAATGACAGTGTTGCCAAAGCTGCAGGCAACTCCATTACTTCTACATCTTTGTTCCCTGGCAATCTTGTTCCTGAAAATGGGGAAACTTATCCCAAGGTTGAAAAATAG 1695 0.4543 MGEGEGEGEGSDGAPKNVVSNDVVANALLPSDVPSKKLARQLDFTAFGGMPATPQPQPPVVLPLPPSASVRVGKPESPKSRSRPGFEIKEATPKKQKQCNCKHSKCLKLYCECFASGIYCDGCNCVNCYNNVENEAARREAVEATLERNPNAFRPKIASSPHGTRDSREDAGEVLILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDQNNNMVYIQQAANAAITGAIGSSGYSSPPISKKRKGQELLLGPTVKDPSVGRLGQQANNVRVPAPSSSLSPIPGARVGSATIGPSKLMYRSLLADIIQPQHLKELCSVLVLVSGQAAKTFTDQKNLMDKHAEDQTETSLASSTQEQLPSQKEANVEKPVADDDCSSANQTDKISPDNSCSDGADVPKGRPMSPGTLALMCDEQDTMFMTAASPVGSRAHACNTSLQPPYGQGTTEVYAEQERIVLTKFRDFLNRVITMGEINETKCSSLARSELESQKDPNINCTGNASTETAHQQGATNDSVAKAAGNSITSTSLFPGNLVPENGETYPKVEK 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00254 564 ProSiteProfiles CRC domain profile. 95 219 IPR005172 -
Pumo6g00254 564 Coils Coil 129 149 - -
Pumo6g00254 564 MobiDBLite consensus disorder prediction 516 536 - -
Pumo6g00254 564 SMART CXC_2 94 134 IPR033467 -
Pumo6g00254 564 SMART CXC_2 179 220 IPR033467 -
Pumo6g00254 564 MobiDBLite consensus disorder prediction 393 407 - -
Pumo6g00254 564 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 182 216 IPR005172 -
Pumo6g00254 564 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 96 131 IPR005172 -
Pumo6g00254 564 MobiDBLite consensus disorder prediction 358 426 - -
Pumo6g00254 564 MobiDBLite consensus disorder prediction 47 86 - -
Pumo6g00254 564 PANTHER TESMIN/TSO1-RELATED 52 491 IPR028307 -
Pumo6g00254 564 MobiDBLite consensus disorder prediction 366 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00254 Pumo-Chr6 3408184 3414797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00254 33 505 CPP Transcription Factor Family AT4G29000 57.935 0.0 563
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Pumo6g00254 TCR 3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00254 - - gmx:100786353 1003.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00254 6 3408184 3414797 Pumo6g00254 6 3408184 3414797 ECH