Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00248 ATGTCTTCTCTCTCCGTCTTTCCATCACTTCAAAAACCTAACTTGAGCCATCCCCGTCTCTCCAATTTCTTCAATTTCCGTTTAAATTATGCGATTTCTTTACCACTACTCTCTCACCGTCCCCTCTGCAAAACCACTGCAACTTTTCACCGCAGAATCCTCTGCAAAGCTTTGAGGGATTCCGGCGAGGACATCAAGGCGGTGCTCAAGTCCGACGACGGGGGCGGCGGAGATGGCGGAGGCGACGACGGTGGGGGTGGGGGTGACCGGGATGAGGAGAAGAAAGAAGGGCCTTTGCCGGAGTGGTTGAATTTCACTTCTGATGACGCCAAAACGGTGCTTGCGGCTTTCGCAATATCGCTTGCGTTTCGAACGTTCGTGGCGGAGCCGAGGTACATTCCTTCGCTGTCAATGTATCCTACATTTGATGTTGGAGATCGAATTGTTGCTGAGAAGGTTTCATACTATTTTAGAAAACCATGTGCAAGTGACATAGTGATATTTAAAAGCCCTCCCGTGCTTCAAGAAGTTGGATATAGCGATGATGATGTTTTTATAAAGCGTGTGGTTGCAAAGGAAGGTGATATTGTGGAGGTTCGTAAAGGGCATCTTGTAGTTAATGGGGTTGAGAGGAATGAAGAGTACATCCTTGAACCACCTGCTTATGAGATGAAACCCACGCGTGTGCCAGAGAACTACGTCTTTGTGATGGGAGATAACCGCAATAACAGCTATGACTCCCATGTGTGGGGTCCCCTGCCAGCGAAGAATATCATAGGTAGATCAGTATTTCGGTATTGGCCACCAAATAGAATTGCTGGCACAGTTTCTAAGGAAAGTTGCACTGTTGAAACCACGCAGGAGACTGCTCTACCATCTCAATGA 885 0.478 MSSLSVFPSLQKPNLSHPRLSNFFNFRLNYAISLPLLSHRPLCKTTATFHRRILCKALRDSGEDIKAVLKSDDGGGGDGGGDDGGGGGDRDEEKKEGPLPEWLNFTSDDAKTVLAAFAISLAFRTFVAEPRYIPSLSMYPTFDVGDRIVAEKVSYYFRKPCASDIVIFKSPPVLQEVGYSDDDVFIKRVVAKEGDIVEVRKGHLVVNGVERNEEYILEPPAYEMKPTRVPENYVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPNRIAGTVSKESCTVETTQETALPSQ 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00248 294 ProSitePatterns Signal peptidases I signature 3. 234 247 IPR019758 GO:0004252|GO:0016020
Pumo6g00248 294 MobiDBLite consensus disorder prediction 84 99 - -
Pumo6g00248 294 ProSitePatterns Signal peptidases I serine active site. 135 142 IPR019756 GO:0004252|GO:0016020
Pumo6g00248 294 Pfam Signal peptidase, peptidase S26 110 267 IPR019533 GO:0004252|GO:0006465
Pumo6g00248 294 MobiDBLite consensus disorder prediction 69 101 - -
Pumo6g00248 294 NCBIfam signal peptidase I 111 269 IPR000223 GO:0006508|GO:0008236|GO:0016020
Pumo6g00248 294 FunFam Peptidase/ serine-type peptidase 135 266 - -
Pumo6g00248 294 SUPERFAMILY LexA/Signal peptidase 124 273 IPR036286 -
Pumo6g00248 294 PANTHER SIGNAL PEPTIDASE I 97 273 IPR000223 GO:0006508|GO:0008236|GO:0016020
Pumo6g00248 294 PRINTS Bacterial leader peptidase 1 (S26A) family signature 126 142 IPR000223 GO:0006508|GO:0008236|GO:0016020
Pumo6g00248 294 PRINTS Bacterial leader peptidase 1 (S26A) family signature 229 248 IPR000223 GO:0006508|GO:0008236|GO:0016020
Pumo6g00248 294 PRINTS Bacterial leader peptidase 1 (S26A) family signature 185 197 IPR000223 GO:0006508|GO:0008236|GO:0016020
Pumo6g00248 294 Gene3D Umud Fragment, subunit A 123 283 - -
Pumo6g00248 294 CDD S26_SPase_I 129 261 IPR019533 GO:0004252|GO:0006465
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00248 Pumo-Chr6 3348007 3351090 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00248 138 268 MADS-box Gene Family AT1G29960 31.818 2.55e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00248 K03100 - gmx:100815810 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00248 6 3348007 3351090 Pumo6g00248 6 3348007 3351090 ECH