Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00231 ATGAAGAAGAAGGAAGCACAAGCATACTCCTCCAATCTCACACTCCTCATTGCCCTGTTTCTAGGCACACTCTCCCTAACCGTCTGTGCCTCCCCTCTAGGCAATGGGCCCCTCACAGACGCTGAAGCAATGTACGTCAAACAACGCCAGCTTCTCTACTACAGAGACGAGTTCGGCGACAGAGGAGAGAATGTCACTGTAGACCCTTCCCTTGTCTTCGAAAATGACCGTCTCAGAAACGCTTATATAGCCTTGCAAGCTTGGAAGCAAGCCATTTTGTCTGATCCCCGCAACCAGACAACCGATTGGGTTGGATCCGACGTGTGCATCTACAACGGAGTGTACTGTGCTCCCGCGCTGGACAACCCCAAGATCCGTACCGTAGCCGGCATTGATCTCAACCATGGCGACATTGCCGGTTATTTACCGGAAGAGCTCGGTTTGCTGGTCGATCTTGCACTCTTCCACATTAACTCCAATAGATTCTGCGGCACTGTGCCGCACAAGTTCGAGAGGTTGATACTGCTCTACGAACTGGATCTCAGTAACAACAGGTTCGCAGGGAAGTTCCCTGAGGTGGTTCTGCGGCTTCCATCGCTCAAGTTCTTGGATCTTCGCTTCAACGAATTTGAAGGCACGGTGCCCAGGGAGTTGTTCGATAAGGATCTGGACGCCATTTTCATCAACGACAACCGTTTCGTCTTTGACCTTCCCGACAACTTCGGCAACTCCCCGGTCTCCGTCATCGTTCTCGCCAACAACAGGTTCCACGGCTGCATTCCGGCGAGCCTGGGAAACATGTCCAACCTGAACGAGATCATCTTGATGAACAACGAATTCCGATCGTGCTTGCCTTCGGAGATTGGGCTTCTGAAGAACCTCACGGTGTTCGACGTCAGCATTAATCAACTTCTTGGTCCCTTACCTAACGCCGTTGGAAACGCCGTCAGCTTAGAGCAGCTCAATGTGGCACACAACTTACTCTCTGGTAAAATTCCAGCTAGTATTTGCATGTTGCCTCACCTTCAGAACTTCACTTATTCCTTTAACTTCTTCACCGGCGAGCCTCCGGCATGTCTCGCCTTGCCGGCGTTTGACGACAGGGTTAACTGCTTACCGTCAAGGCCGGTGCAGAGGCCTCCGGCGCAATGTAAGTCGTTCTTGTCTAAGCCTGTGGACTGTAACTCCTTTAATTGTAAACCATTTGTTCCATCACCTACAACACCGGTAACACCTTCACCGTTGCCTTCACCTCCATCACCATTTCCTTCGCCTACGACACCTGTAACACCTTCACCATCACCTGCTACACCTTCGCCATTTCCTTCACCTACGACACCTGTAACACCTTCACCGGTACCTTCACCTACAACACCTTCACCTCCATCACCTACAACACCTTCACCGGTACCTTCACCTCCGTCACCCACAACACCTTCACCGGTACCTTCACCTCCGTCACCCACAACACCTTCACCGGTACCTTCACCTCCATCACCCACAACACCTTCACCTCCATCACCTGCAACACCTTCACCACTACCTACACCTCCAGTTGTGGGACATTCCCCTCCACCACCTGTTCATACTCCTCCTTCTCCAGTGTATTTGCCACCACCACCACATTCTTCCCCTGCACCACCTGTGTACCCTCCACCTTCACCTACTCCAACTCCACCACCTTGTATTGAACTTCCTCCACCCCCTCCCCAATCAACACCTTCTCCCCCACCACCGGCCCCATCTCACACACCTTATCACCCACCACCATCTCCATCTCACACACCTTACCTGCCACCACCATCTCCATCTCCCCCTCCCCCTCCCCCTCCCCCACCAGTGTATGTTTCTCCACCTCCACCAGTTCAATACAGTTCGCCGCCGCCGGCATCGCCGCCTCCGTGCCAACCTCCACCCGCATTTTCTCCTCCTCCACCGGTTGTACACCAAAACCCACCACCTGCCCCTGTATATGAAGGGCCATTGCCACCTGTCGTTGGACTACCATACGCATCGCCTCCACCACCACCCTTTTATTGA 2040 0.5319 MKKKEAQAYSSNLTLLIALFLGTLSLTVCASPLGNGPLTDAEAMYVKQRQLLYYRDEFGDRGENVTVDPSLVFENDRLRNAYIALQAWKQAILSDPRNQTTDWVGSDVCIYNGVYCAPALDNPKIRTVAGIDLNHGDIAGYLPEELGLLVDLALFHINSNRFCGTVPHKFERLILLYELDLSNNRFAGKFPEVVLRLPSLKFLDLRFNEFEGTVPRELFDKDLDAIFINDNRFVFDLPDNFGNSPVSVIVLANNRFHGCIPASLGNMSNLNEIILMNNEFRSCLPSEIGLLKNLTVFDVSINQLLGPLPNAVGNAVSLEQLNVAHNLLSGKIPASICMLPHLQNFTYSFNFFTGEPPACLALPAFDDRVNCLPSRPVQRPPAQCKSFLSKPVDCNSFNCKPFVPSPTTPVTPSPLPSPPSPFPSPTTPVTPSPSPATPSPFPSPTTPVTPSPVPSPTTPSPPSPTTPSPVPSPPSPTTPSPVPSPPSPTTPSPVPSPPSPTTPSPPSPATPSPLPTPPVVGHSPPPPVHTPPSPVYLPPPPHSSPAPPVYPPPSPTPTPPPCIELPPPPPQSTPSPPPPAPSHTPYHPPPSPSHTPYLPPPSPSPPPPPPPPPVYVSPPPPVQYSSPPPASPPPCQPPPAFSPPPPVVHQNPPPAPVYEGPLPPVVGLPYASPPPPPFY 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00231 679 Gene3D Ribonuclease Inhibitor 243 366 IPR032675 -
Pumo6g00231 679 PRINTS Proline rich extensin signature 430 447 - -
Pumo6g00231 679 PRINTS Proline rich extensin signature 455 480 - -
Pumo6g00231 679 PRINTS Proline rich extensin signature 412 428 - -
Pumo6g00231 679 Gene3D Ribonuclease Inhibitor 80 242 IPR032675 -
Pumo6g00231 679 MobiDBLite consensus disorder prediction 406 679 - -
Pumo6g00231 679 SUPERFAMILY L domain-like 82 363 - -
Pumo6g00231 679 FunFam Leucine-rich repeat extensin-like protein 5 244 383 - -
Pumo6g00231 679 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 30 544 - -
Pumo6g00231 679 FunFam Leucine-rich repeat extensin-like protein 1 82 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00231 Pumo-Chr6 3149565 3152519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00231 35 407 Leucine-rich Repeat extension Gene Families AT3G24480 75.936 0.0 613
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00231 - - gmx:100814585 721.079