Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00228 ATGGCAAGTCGACTGAAGGAAGATGAGAAAAATGAACGAATAATTCGAGGTCTTCTCAAACTCACACCAAATCGAAGATGTATTAACTGTAACAATTTGGGACCACAATATGTTTGCACAAATTTCTGGACGTTTGTTTGCACTAACTGTAGCGGAATACACCGAGAATTTACACATCGGGTAAAATCAGTTTCAATGGCTAAATTTAGTGCACAGGAAGTTAGTGCACTTCAAGAAGGAGGAAATCAGCGTGCAAAGGAAATCTATTTTAAAGAATGGGATCCACAACGTCATTCTTTGCCTGATAGCAGCAATGTTGACAGGCTCCGGGACTTTATTAAGCATGTTTATGTGGATAGAAGATTCAGCGGTGAGAGGACCTATGACAAACCTCCAAGAGTAAAGGGTGACAAGGATGATTTCTATGAAAACAAGAGGACAGAGACGCACCAGGGAAGCCCTTCATATAGTGACAGGTCTAGTCCTGGTGGAAGAAGTCCCGGATATGATCAAGAAAATAGGCAATATGGTGATTACAAGAAAAGCCCTGGTCGTCCTCCAATAATAAATGATTGGCGTCGAGAAGATAGATTTGGGGATGGACGGAAATTTGAAGATCATAGAATATCCGATGGAAATCATAAGGTGGAAAGTGCTTCTCCTGAGCGAACCAAGGATCTGGATTCTTCCAGCCCACCTGTGGTCCGACCTGTTAGAGAGATTTTGGGAGAAAATGTAGTACCTCTTCGAATAAGTGAACCGCCCAAAACAAACAGTGGACAGGCTGCTAATGGCTCAGCACTCACACAGAGAACTGCATCTTCCAGTAGCTTAGCATCCAGCAATGGAACCCCTGCAGAAGTTAAGCTTGAGACTATTAAGAGCCTTATTGATTTTGATGATGATCCTGAACCACCTGTTGCTTCAGCAATTCCTCAAGCCCAGCAAACTACTGTGGCTCAACTTGGGATTCCTGCAAATTCCAATGATAATAATTGGGCCTCTTTTGATGTTGCTCCTGAGACAAAAGCACCTCAGGGTCCTTCGAATGTAAATCCACTTGAATCCATGCTGACACAATTGTCAGTACCAGTATCTTTACCTTCTCAGGTTTCTGGAGCCCAAGGACCTGTGACGGGATCTGCTCTTACCGCTACTGCTGCAGGAGCTCCAACTGTTGGCATTTTCTCAACATTCCCAGCCAGTGGTGCTTCAGTAACATCTTTTGGATTGACAACAGCATCAACTCTCAATAATGCAGGACAGTGGGCTACTTTGCAGTATCAGCAACAGCAACCTTTGTTCACTGCTGTTGCTAGTCAGCCTACTATTCAACAATCTACACCACCAGCTGGTGGAGCTTTGAATAATCAGCCCTGGACTGTACCTTCTGTACCATCGGTACAAGGGCATCCAAGCACACCAATGCCTCATGCATCACACCTTGTCCCAAAGCCTGCCAATGAGGCTAGATCCAGTGTTGTTTTACAACCTTCTACAGTAGACATAAAATCAAGTGGAAGAAAGTGA 1530 0.4412 MASRLKEDEKNERIIRGLLKLTPNRRCINCNNLGPQYVCTNFWTFVCTNCSGIHREFTHRVKSVSMAKFSAQEVSALQEGGNQRAKEIYFKEWDPQRHSLPDSSNVDRLRDFIKHVYVDRRFSGERTYDKPPRVKGDKDDFYENKRTETHQGSPSYSDRSSPGGRSPGYDQENRQYGDYKKSPGRPPIINDWRREDRFGDGRKFEDHRISDGNHKVESASPERTKDLDSSSPPVVRPVREILGENVVPLRISEPPKTNSGQAANGSALTQRTASSSSLASSNGTPAEVKLETIKSLIDFDDDPEPPVASAIPQAQQTTVAQLGIPANSNDNNWASFDVAPETKAPQGPSNVNPLESMLTQLSVPVSLPSQVSGAQGPVTGSALTATAAGAPTVGIFSTFPASGASVTSFGLTTASTLNNAGQWATLQYQQQQPLFTAVASQPTIQQSTPPAGGALNNQPWTVPSVPSVQGHPSTPMPHASHLVPKPANEARSSVVLQPSTVDIKSSGRK 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00228 509 PANTHER ARFGAP/RECO-RELATED 1 509 IPR044820 GO:0005096
Pumo6g00228 509 MobiDBLite consensus disorder prediction 148 168 - -
Pumo6g00228 509 MobiDBLite consensus disorder prediction 248 285 - -
Pumo6g00228 509 MobiDBLite consensus disorder prediction 126 147 - -
Pumo6g00228 509 MobiDBLite consensus disorder prediction 331 352 - -
Pumo6g00228 509 MobiDBLite consensus disorder prediction 492 509 - -
Pumo6g00228 509 Pfam Putative GTPase activating protein for Arf 13 123 IPR001164 GO:0005096
Pumo6g00228 509 MobiDBLite consensus disorder prediction 126 234 - -
Pumo6g00228 509 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Pumo6g00228 509 MobiDBLite consensus disorder prediction 252 285 - -
Pumo6g00228 509 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 135 - -
Pumo6g00228 509 MobiDBLite consensus disorder prediction 187 224 - -
Pumo6g00228 509 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Pumo6g00228 509 MobiDBLite consensus disorder prediction 441 509 - -
Pumo6g00228 509 CDD ArfGap_AGFG 12 122 - -
Pumo6g00228 509 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Pumo6g00228 509 Gene3D Arf GTPase activating protein 2 131 IPR038508 -
Pumo6g00228 509 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Pumo6g00228 509 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Pumo6g00228 509 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Pumo6g00228 509 MobiDBLite consensus disorder prediction 441 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00228 Pumo-Chr6 3113396 3117242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00228 12 122 C2H2 Transcription Factor Family AT4G21160 35.043 2.63e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00228 - - gmx:100781002 898.271