Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00226 ATGACTGAAACTAAGTCAACCAGTAAGATAACTAAGAAACAAGACGCTAAAAAAGTTTGTAGTTTCAGCCATCAGCCCTCTAGAAAGCAACCTCGGAAGGGTGAAAACCCTACTCGGCTCATACCTCCTCCTGACCAGTCTTCTGATTTTGGCCTTTCAAACACTTGGATTTGTAAAAATGCTGCTTGTAGGGCGGTTCTGTCTATGGATGACACATTTTGTAGAAGATGCTCTTGCTGTATTTGTCACCTTTTTGATGATAACAAGGATCCTAGTCTTTGGTTGGTATGCACATCTGAATCTGCTCAAGGGGACTCCTGTGGGTTGTCTTGCCATATTGAATGTGCCCTTCAACATGAAAAAGTGGGAGTTGTTGATCATGGGCAACTGATGCAACTAGATGGTGGTTATTGTTGTGCGTCCTGTGGTAAAGTTACGGGGATACTTGGATGCTGGAAGAAGCAGCTAAACATAGCTAAGGATGCCCGGCGTGTTGATGTACTCTGTTACAGGATATATTTGAGCTACAGGCTCCTCGATGGAACCTCAAAATTCAAAGACTTGCATCAAACAGTACAAGAGGCAAAGGCTAAACTGGAGACAGAAGTTGGTCCTGTCAATGGTGTTTCTGCCAAGATGGCTCGAGGCATTGTCAGCAGACTCCCTATTGCCAGCGATATACAGAAACTCTGCTATCTTGCTATTGAGAAAGCTGATAGGTGGCTCGCCACTGTTCCCAATGTAAATCCAGATTCCACAGAGGGTTCACTTCCTGCTGCTTGCAAGTTTGTTTTTGAAGAGGTAACAACTTCCTCAGCCAAAATCATTTTAATTGAAATGTCAAATATATGTTCTGAGGAAATTAAGGGATACAAGCTCTGGTATTACAAGAGTCGGGATGAGTCACCCACTAAAGATCCTATTTCCATGTTTCCCAAATCTCAGAGGAGGATTTTGATATCCAACCTCAAGCCTTGCACAGAATATACTTTTCGGATTATATCTTACACTGATACACATGACTTGGGTCATTCCGAGGCTAAGTGTTTCACCAAGAGCATTGAGATAATTAAAAAAAATCCCTCCTCATCTGTTGCTATGAATAATGAAAAAGAGAGCCTTCTAACTAGGGGTAATTCATCGGGCTCCAAGATAGGGCCCAATGCCACAATGGAAGACTATGGATTCAAGGTTCGAGACCTTGGAAAAATTTTGCATCTTGCTTGGGCTCAAGAACAAGGTTACTTGGAAGAGTTTTGCTGTGCCAATGTGAAAAATTGCTGTGGACAAAGTGAAATGGTGGATAAGCCTAGAATTCCAGCAGCACAGTTGCCTTCAGTTTCACGAGGCCTTGATTTAAATGTTGTTTCAGTTCCTGATTTAAATGAAGAGCTAACGCCTCCTTTTGAGTATTCTAGGGATGAAGATAATGGTTGCTCTTTGCTGCAAGCTGTTGAGGCAGACGATGATGCTGCTTCTCATGATCTAGAGAAAAATGATTTAGCAAGATCACATGGGAGTGGGGATTCCCAGACCTGGACCCATGGGCCAACAGGAGAAGTGTCTGCTGTTGATTCTCGCATAGATATATGCAGGAAAAGGATAGCAAGCACAAACGAAGAGACTCATGATTGTGACAGCACTTTGATAAATGGTTCTCCTTTACGCATATCTGATGGTTCATGTTCCTTGGATGAGAACTTTGAGTATTGTGTGAAAGTAATTCGTTGGCTAGAATGTGAGGGTCACATCAAACAGGAATTTAGGTTGAAATTGCTAACATGGTTTAGTTTAAGGGCGACAGAGCAAGAACGCAGGGTGGTTAATACCTTCATTCAAACTCTTATTGATGATCCAAGTAGTTTGGCTGGACAACTGGTAGACTCTTTTTCTGATATTATATCCAACAAGAGGCTAAGAAATGGATTCTGTAGTAAAGCTGGGACATCAAATTAA 1956 0.4202 MTETKSTSKITKKQDAKKVCSFSHQPSRKQPRKGENPTRLIPPPDQSSDFGLSNTWICKNAACRAVLSMDDTFCRRCSCCICHLFDDNKDPSLWLVCTSESAQGDSCGLSCHIECALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLNIAKDARRVDVLCYRIYLSYRLLDGTSKFKDLHQTVQEAKAKLETEVGPVNGVSAKMARGIVSRLPIASDIQKLCYLAIEKADRWLATVPNVNPDSTEGSLPAACKFVFEEVTTSSAKIILIEMSNICSEEIKGYKLWYYKSRDESPTKDPISMFPKSQRRILISNLKPCTEYTFRIISYTDTHDLGHSEAKCFTKSIEIIKKNPSSSVAMNNEKESLLTRGNSSGSKIGPNATMEDYGFKVRDLGKILHLAWAQEQGYLEEFCCANVKNCCGQSEMVDKPRIPAAQLPSVSRGLDLNVVSVPDLNEELTPPFEYSRDEDNGCSLLQAVEADDDAASHDLEKNDLARSHGSGDSQTWTHGPTGEVSAVDSRIDICRKRIASTNEETHDCDSTLINGSPLRISDGSCSLDENFEYCVKVIRWLECEGHIKQEFRLKLLTWFSLRATEQERRVVNTFIQTLIDDPSSLAGQLVDSFSDIISNKRLRNGFCSKAGTSN 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00226 651 CDD FN3 287 338 IPR003961 GO:0005515
Pumo6g00226 651 MobiDBLite consensus disorder prediction 500 520 - -
Pumo6g00226 651 MobiDBLite consensus disorder prediction 1 48 - -
Pumo6g00226 651 MobiDBLite consensus disorder prediction 505 519 - -
Pumo6g00226 651 PANTHER VIN3-LIKE PROTEIN 2-RELATED 9 646 IPR044514 GO:0010048|GO:0040029
Pumo6g00226 651 Gene3D Immunoglobulins 244 347 IPR013783 -
Pumo6g00226 651 ProSiteProfiles Fibronectin type-III domain profile. 257 356 IPR003961 GO:0005515
Pumo6g00226 651 Pfam PHD - plant homeodomain finger protein 58 176 IPR032881 -
Pumo6g00226 651 SUPERFAMILY Fibronectin type III 263 340 IPR036116 GO:0005515
Pumo6g00226 651 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00226 Pumo-Chr6 3063374 3068551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00226 52 642 PHD Gene Family AT3G24440 48.013 2.53e-180 523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00226 - - gmx:100815645 1259.2