Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00209 ATGGAAAGTTCACAAAGACAATGTGATAAACAAGTGTCTGGAGAAAGGAAAATCCTGATTTCGTGCAGTGACCCATATGCCACAGATTATTCCAGCGACGAAGACAACAAAGGCACTAAAAAGCGACTTGTGGTAGAGATTAAGATTCCAAGCACTAGTACTAGTACTAATACTAAAAAAGTGAATCCCCTGAAACGAAAACGCACCAGTAAGTTTAAAGGTGTTAGATGTAGGAAGTGGAGGAAGTATGTAGCAGAGATAAGAGACCCATTTCGAAAGTGTCGTGTGTGGCTTGGTACTTTCAATACTGAGCAAGAGGCTGCGTCTGCTTATAATCAAAAGAGGGAAGAGTTTGACAGAAAAAAGGCTCTTTTAAAAGGAGGTGCATCAGTGCATTCGGAGGCTACCAATGCCAATCAAGCTTTGCCTCAACCTTCTCAACAATCTTAA 450 0.4111 MESSQRQCDKQVSGERKILISCSDPYATDYSSDEDNKGTKKRLVVEIKIPSTSTSTNTKKVNPLKRKRTSKFKGVRCRKWRKYVAEIRDPFRKCRVWLGTFNTEQEAASAYNQKREEFDRKKALLKGGASVHSEATNANQALPQPSQQS 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00209 149 MobiDBLite consensus disorder prediction 127 149 - -
Pumo6g00209 149 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 16 141 - -
Pumo6g00209 149 SUPERFAMILY DNA-binding domain 70 120 IPR016177 GO:0003677
Pumo6g00209 149 PRINTS Ethylene responsive element binding protein signature 72 83 IPR001471 GO:0003700|GO:0006355
Pumo6g00209 149 PRINTS Ethylene responsive element binding protein signature 94 110 IPR001471 GO:0003700|GO:0006355
Pumo6g00209 149 CDD AP2 70 112 IPR001471 GO:0003700|GO:0006355
Pumo6g00209 149 Pfam AP2 domain 70 119 IPR001471 GO:0003700|GO:0006355
Pumo6g00209 149 ProSiteProfiles AP2/ERF domain profile. 71 128 IPR001471 GO:0003700|GO:0006355
Pumo6g00209 149 MobiDBLite consensus disorder prediction 132 149 - -
Pumo6g00209 149 Gene3D AP2/ERF domain 70 126 IPR036955 GO:0003700|GO:0006355
Pumo6g00209 149 SMART rav1_2 71 134 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00209 Pumo-Chr6 2811412 2811861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00209 16 130 AP2-EREBP Transcription Factor Family AT1G68550 44.203 1.13e-20 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo6g00209 AP2 1.6e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00209 - - vun:114178173 112.079