Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00204 ATGGAAGAAAACCTACCTCCTGGGTTCAGGTTCCATCCCACAGACGAAGAACTCATCACATATTATTTATTAAGGAAAGTGTCCGATATTGGCTTCACATCCAAAGCTGTAGCAGTTGTTGATCTCAATAAATCTGAACCTTGGGACCTCCCAGGTAAGGCTTCGATGGGTGAGAAGGAATGGTATTTCTTCAGCTTGAAAGATCGGAAATATCCAACTGGGCTTCGAACCAACCGAGCCACTGAATCAGGATATTGGAAAACCACAGGAAAAGATAAGGAAATTTATGGTGGTGGAGTTTTGATAGGGATGAAGAAAACCTTAGTCTTTTATATGGGCAGAGCTCCGAGGGGTGAGAAAAGTAACTGGGTTATGCACGAATATAGGCTTGAAAACAAGCAACCCTATAGAACTTCGAAGGAAGAATGGGTGATTTGCAGAGTCTTCCAAAAGACCTCAGCACCCAAGAAACCACAGCAGACATTATCATCCCAACCATCTCAAGAGTCCCCTACCTCAATGGTCAACGAATTTGGTGATGTTGACCTACCAAATCTAAATAGCATTGCAAATTCATCCAGTAGCTTCACCAACATTGCAGGACAAACTTACAATGGTGATCCCAGCAATGTTAACACAAACATGAACTTGACCATGAATTGGCCTTCTGCAACCGAGGTTCCATCTCTTCCATGGCCTTCTGGATTGCTGAATCCAAACCTTTCTGTGAATTCATTGCTTCTCAAGGCATTACAGCTTAGAAATACTTACCAACAAAGAGAAGCTGCGACCAGTGATCATCACTTTGCAACATATGTTCCTCAAGGGATTTCTCACAATAATATTGGAACTGATCACCTCACCCCAAATCTCAGTGCTTCTTCTTCTTCCAAAGCTTTAGAATCTTGTGTGCCGCAGCAGGAGCAACCATTCAATATGGACTCCATTTGGTGA 954 0.4277 MEENLPPGFRFHPTDEELITYYLLRKVSDIGFTSKAVAVVDLNKSEPWDLPGKASMGEKEWYFFSLKDRKYPTGLRTNRATESGYWKTTGKDKEIYGGGVLIGMKKTLVFYMGRAPRGEKSNWVMHEYRLENKQPYRTSKEEWVICRVFQKTSAPKKPQQTLSSQPSQESPTSMVNEFGDVDLPNLNSIANSSSSFTNIAGQTYNGDPSNVNTNMNLTMNWPSATEVPSLPWPSGLLNPNLSVNSLLLKALQLRNTYQQREAATSDHHFATYVPQGISHNNIGTDHLTPNLSASSSSKALESCVPQQEQPFNMDSIW 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00204 317 ProSiteProfiles NAC domain profile. 5 151 IPR003441 GO:0003677|GO:0006355
Pumo6g00204 317 FunFam NAC domain-containing protein 100-like 14 155 - -
Pumo6g00204 317 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 219 - -
Pumo6g00204 317 SUPERFAMILY NAC domain 3 151 IPR036093 GO:0003677|GO:0006355
Pumo6g00204 317 MobiDBLite consensus disorder prediction 155 175 - -
Pumo6g00204 317 Gene3D NAC domain 14 155 IPR036093 GO:0003677|GO:0006355
Pumo6g00204 317 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00204 Pumo-Chr6 2499759 2503537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00204 1 317 NAC Transcription Factor Family AT3G18400 58.859 7.54e-120 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo6g00204 NAM 2.4e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00204 - - gmx:100775645 568.54