Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00196 ATGGCTGAATTCACTGCAGATTTGCAAAGTCTTAGATTTCCTTTCTTAGATATTGATAACATGGAAATGCAGAACTTTATGCCATTCTCCTGTGACACCTTCTTAGGCTCTCCAGAAGCTGAATTTCCAGGAAACTTGGAAGAAAATTTTCCGGGTCTTGTTCAATGTGTCGATCACAATGCAGTTCCAGTTTTAGTTCCTATTAGTTCAGCTAAAAATGAAATACATGAAGATAAAAAGAGGAAAGCAACTGATATATGTGAGCCCAGTTCTGCAAATTCAACTCCTGCTGTTTCTGAGAGTGGAAGCAAGACAAGAACTACTTCTGGAAGAGGCAAGAGAGTAAAAAGGAATGTGATAGAAGACAAGAAGCCAAATGAAGTAGTTCATGTTAGAGCCAAACGAGGTCAAGCTACTGATAGTCACAGTTTAGCAGAAAGGGTTAGAAGAGGGAAAATCAATGAAAAACTCAGGTGCTTGCAGAACATTGTCCCAGGATGTTACAAGACCATGGGTATGGCAATAATGTTGGACGAGATAATAAACTATGTCCAGTCCTTGCAACATCAAGTGGAGTTCCTCTCTATGAAGCTTACTGCAGCAAGTACCTATTATGACTTCAATTCAGAGTCAGATGCTTTAGAAACAATGCAGAGAGCAAGGGCATCCGAGGTGAAAGAATTGGGCAAGTATGTGAGAGAAGGAAGTGAAGGAGTTTCTTGCTTTGAATCAACATGGCCGTGGCCCTGTGACTTGGGTTTTGGATGTTTTAACACAAACCACACAAGTCATGAATAA 798 0.4035 MAEFTADLQSLRFPFLDIDNMEMQNFMPFSCDTFLGSPEAEFPGNLEENFPGLVQCVDHNAVPVLVPISSAKNEIHEDKKRKATDICEPSSANSTPAVSESGSKTRTTSGRGKRVKRNVIEDKKPNEVVHVRAKRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVEFLSMKLTAASTYYDFNSESDALETMQRARASEVKELGKYVREGSEGVSCFESTWPWPCDLGFGCFNTNHTSHE 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00196 265 MobiDBLite consensus disorder prediction 87 108 - -
Pumo6g00196 265 MobiDBLite consensus disorder prediction 77 114 - -
Pumo6g00196 265 CDD bHLH_AtBPE_like 127 212 - -
Pumo6g00196 265 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 135 205 IPR036638 GO:0046983
Pumo6g00196 265 Gene3D - 137 200 IPR036638 GO:0046983
Pumo6g00196 265 Pfam Helix-loop-helix DNA-binding domain 141 188 IPR011598 GO:0046983
Pumo6g00196 265 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 137 187 IPR011598 GO:0046983
Pumo6g00196 265 SMART finulus 143 193 IPR011598 GO:0046983
Pumo6g00196 265 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 70 214 IPR024097 GO:0006355
Pumo6g00196 265 FunFam transcription factor BEE 3-like 134 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00196 Pumo-Chr6 2396696 2398565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00196 42 246 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 53.365 1.13e-59 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo6g00196 HLH 0.00025 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00196 - - gmx:100777160 461.07