Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00195 ATGTCTTCTTCAAAGAGCGTCAGCAGTTCTAGTGAAGATGACAATGAACTTAGAAGAGGGCCTTGGACTCTTGAAGAGGATAATTTGCTCTCCCAATACATTTCTAATCATGGAGAAGGGCGATGGAATTTGCTGGCTAAACGTTCAGGATTAAAGAGAACTGGAAAAAGTTGCAGATTAAGGTGGCTAAATTATCTAAAACCAGATGTAAAACGGGGAAATTTAACCCCAGAAGAGCAACTTATAATTCTTGAACTCCACTCAAAGTGGGGAAACAGGTGGTCAAAAATTGCACAACATTTGCCAGGCAGAACAGACAATGAAATCAAGAACTATTGGAGAACTAGGATTCAGAAACAAGCAAGACATTTGAAAATTGACACTGACAGCAGAGAGTTTCAAGAACTTGTTAGGCGTTTCTGGATGCCAAGATTGCTTCAGAAAGCAAAAGAATCATCTTCTTCAGCCATGTCAATTCAAAACCAGGCAATTCCTATGCCTCTTGATGGTGTTTCTCAGCATTCAACTGTTGGGACCATACCATCACACCCTCCTTGGCAGGGACCTTGTCTGAATGAAGCTGGTCCCACTTACATGGACCAACATGAGCAGAACTCAGACTCTGAACACAACAATGGTTCATGCATCTCCTTGTCTGAGTCAGCAAATATTCCAAAAGTGCCTCAGCATTTTGGACACACCACCATCACCCAATTTCATGCCTTGAACAACAATGACTTTGGCACCTTCACATATGACTTTGGTGATCATGTAAATAACAATGTCTATGAGATGGGCAACTTCAAAACGCCTACTACAAGGGTGGCTGAGGATGTGCAATACCCAATTGGTGATTGTCAAATGGCAGGAAGCAATTGGGTAAACAATGATTTTGCATGCAACATGTGGAACATGGATGAATTGTGGCAATTTAGCAAGTTACAAAAATAA 951 0.4122 MSSSKSVSSSSEDDNELRRGPWTLEEDNLLSQYISNHGEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPEEQLIILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRIQKQARHLKIDTDSREFQELVRRFWMPRLLQKAKESSSSAMSIQNQAIPMPLDGVSQHSTVGTIPSHPPWQGPCLNEAGPTYMDQHEQNSDSEHNNGSCISLSESANIPKVPQHFGHTTITQFHALNNNDFGTFTYDFGDHVNNNVYEMGNFKTPTTRVAEDVQYPIGDCQMAGSNWVNNDFACNMWNMDELWQFSKLQK 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00195 316 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 14 201 IPR044676 GO:0003700|GO:0006355|GO:0043565
Pumo6g00195 316 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
Pumo6g00195 316 Pfam Myb-like DNA-binding domain 72 115 IPR001005 -
Pumo6g00195 316 MobiDBLite consensus disorder prediction 198 217 - -
Pumo6g00195 316 Gene3D - 75 118 - -
Pumo6g00195 316 Gene3D - 19 71 - -
Pumo6g00195 316 ProSiteProfiles Myb-like domain profile. 14 66 IPR001005 -
Pumo6g00195 316 FunFam Myb transcription factor 19 71 - -
Pumo6g00195 316 SMART sant 71 119 IPR001005 -
Pumo6g00195 316 SMART sant 18 68 IPR001005 -
Pumo6g00195 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 66 IPR017930 -
Pumo6g00195 316 MobiDBLite consensus disorder prediction 196 217 - -
Pumo6g00195 316 FunFam MYB transcription factor 75 117 - -
Pumo6g00195 316 CDD SANT 76 115 IPR001005 -
Pumo6g00195 316 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Pumo6g00195 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Pumo6g00195 316 SUPERFAMILY Homeodomain-like 17 113 IPR009057 -
Pumo6g00195 316 CDD SANT 21 66 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00195 Pumo-Chr6 2384891 2387237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00195 14 311 MYB Transcription Factor Family AT1G68320 45.631 4.01e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo6g00195 Myb_DNA-binding 9.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00195 K09422 - gmx:778042 613.224