Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00189 ATGGCGACGCCGTTGGACGGAGGAGGAGTGGCCGTGCTCCCGAATTCCGTCAACAACGTGGACTCCGCCTCGGCTCTCAATGGCAGCTTGAAGTGCTCCAAACCGGAGTCGCCAATTTTGATTTTCCTGTTCTTTCACAAAGCGATTCGGAATGAGCTTGACGCGCTGCACCGTTTGGCCGTCGCATTCGCCACCGGCAACCGCTCCGACATTAAGCCGCTCTCCGAGCGCTACCATTTCCTCAGCTCCATGTACAGGCACCACTGCAATGCTGAAGACGAGGTGATTTTTCCAGCTCTAGATATACGTGTGAAGAATGTAGCACAGACATATTCTCTTGAGCACAAGGGTGAAAGCAACCTTTTTGATCATCTATTTGAGCTTTTAAATTCTTCTGTCAATAATGATGAAAGTTTTCCAAGAGAGTTGGCATCCTGCACAGGAGCTTTGCAGACGTCAGTTAGTCAACACATGGCGAAGGAAGAGGAGCAGGTATTTCCTCTGCTTATTGAGAAGTTTTCTCTTGAGGAACAGGCATCCTTAGTTTGGCAGTTTCTTTGCAGTATTCCTGTGAATATGATGGCCGAATTTCTACCGTGGCTTTCAACATCTATATCACCTGATGAATCTCAGGATTTGCGAAATTGCTTAATCAAGATAGTGCCACAGGAAAAGCTTCTTCAGAAGGTTGTTTTCACCTGGATGGAAGGAAGAAGTAGTGTTAACACAGTTGAAACTTGTGTAGATCATTCTCAAGTTCGATGTAGTTCTAGGTCATTAACCCATCAAGTTGAGAAAGTAAACTGTGCTTGTGAATCCACAACAACTGGAAAAAGGAAACATTCTGGATCTATGATGGATGCTTCTGATACCACTGGAACACATCCTATAGATGAAATATTGCTCTGGCATAATGCAATAAAAAAAGAGTTAAGTGAGATAGCAGTGGAGGCCAGAAAGATACAACACTCTGGAGATTTTACTAATCTATCTGCTTTTAACGAAAGATTTCAATTCATAGCCGAAGTTTGCATATTTCACAGTATTGCTGAGGACAAGGTTATTTTTCCCGCAGTAGATGGAGAATTTTCCTTCTTTCAGGAGCATGCTGAAGAAGAAAGCCAATTTAATGACTTCCGCCGTTTGATTGAAAGTATTCAAAGTGAAGGAGCATCATCTAATTCAGATGTTGAATTTTATTCCAAGTTATGCACACATGCTGATCATATAATGGAAACCATACAGAGGCATTTCCATAATGAAGAAGTTCAGGTTCTTCCACTTGCAAGAAAGCACTTTAGCTTTAGAAGGCAATGTGAACTTTTGTATCAAAGCTTATGCATGATGCCTCTGAAATTGATTGAGCGTGTCCTGCCATGGTTGGTAGGATCTTTAACTGAAGATGAAGCAAAGATGTTTCAGAGAAATATGCAGTTGGCAGCTCCAGCAACAGATTCTGCTCTAGTCACACTCTTCTGTGGATGGGCTTGCAAGGCTCGTAATGAAGGTCTGTGTTTGTCTTCAGGTGCATCAGGTTGCTGTCCTGCTCAAAGGCTTTCTGATATTGAAGAAAATATTGGTCGGCCATCCTGTGCTTGTGCATCTGCATTGTCTAATAGACATTGCTCAGTATTAGCTGAATCAGGTGGGAACAAAAGACCAGTCAAGCGAAACATATTGGAGTCACACAAAAATGAAGATCTACCTGAAACTTCAGAGACTGAAAGTATTCAGAAACAATGTTGTAGTGCACGGTCTTGTTGGGTACCAGGTTTAGGAGTAAGCAGTAACAATTTAGGGCTGAGTTCTCTTTCTACAGCCAAGTCCTTACGGTCCTTGTCTTTCAGCTCTTCTGCCCCATCTCTTAATTCCAGTCTTTTCATATGGGAAACAGAGAGAAGCTCATGCAATATTGGATCTACACAAAGACCAATTGATACCATATTTAAATTCCATAAAGCTATACGCAAAGACTTGGAGTATCTAGATGTTGAATCTGGAAAGCTGAGTGATGGTGATGAGACAATTCTTCGGCAATTTAATGGAAGATTTCGTCTTTTGTGGGGTTTGTATAGAGCTCATAGTAATGCTGAAGATGATATAGTATTTCCAGCTTTAGAATCCAAAGAGGCACTTCATAACGTGAGTCATTCGTACATGCTGGACCATAAGCAGGAAGAACAATTGTTTGAAGATATTTCCTGTGTTCTCTCAGAGTTTTCTGTCCTTCATGAAGCCTTGCAGATGACCCGTATGTCAGAGAATTTAAGTGAAAGTAATTTTGGAACCTCTGATGCCAATACTAGTGATGATATAAAAAAATATAATGAACTTGCTACTAAGCTTCAGGGGATGTGCAAATCCATAAGAGTGACCCTGGATCAGCATCTTTTCAGAGAAGAATGCGAACTGTGGCCATTGTTTGGGAGACATTTCACTGTAGAAGAACAAGACAAGATAGTGGGTCGGATAATTGGCACAACAGGTGCTGAAGTTCTCCAATCAATGTTACCATGGGTAACGTCTGCACTTACTCAGGATGAACAGAACAAAATGATGGATACATGGAAGCAGGCAACTAAGAACACTATGTTCAATGAATGGCTTAGCGAATGCTGGAAAGAGAGTCCAGTTTCTATAGCACAGACAGAAACATCAGATCATAGCACTTCTCAGAGAGGTGCTGAATATCAAGAAAGCTTGGACCACAATGATCAGATGTTCAAGCCAGGTTGGAAAGACATATTTCGGATGAATCAGAATGAACTTGAGTCAGAGATCCGCAAGGTATATCGAGACTCAACTCTTGATCCAAGGAGAAAGGCATATCTTGTGCAGAATCTACTGACAAGTCGATGGATAGCTGCCCAGCAGAAATCACCTAAAGCTTTATCAGAAGGATCATCTAACAGTGTAGAAATAGAAGGACTCTCACCATCATTTCGGGACCCAGATAAACATGTATTTGGGTGTGAGCACTATAAGAGAAATTGCAAGCTTCGGGCTGCGTGTTGTGGCAAGTTATTTACTTGCAGATTTTGTCATGACAATGTCAGCGATCACTCTATGGATAGAAAAGCAACATCGGAAATGATGTGTATGCGCTGCCTGAATATACAGCCAATAGGGCCCATATGCATGACACCTTCATGTAATGGATTTTCGATGGCAAAGTACTATTGCAATATATGCAAATTTTTTGATGATGAAAGGAATGTATATCATTGCCCATTTTGCAATTTATGCCGTGTTGGACGAGGGCTTGGGATTGATTATTTTCATTGCATGAAATGCAATTGTTGCCTGGGGATTAAATCAGCATCTCACAAGTGCCTGGAGAAAGGTTTAGAAATGAACTGCCCAATTTGTTGTGATGACTTGTTCACTTCAAGTGCTACAGTCAGAGCTCTACCTTGCGGCCACTATATGCATTCTGCTTGCTTCCAGGCATACACGTGTAGTCACTACACATGTCCAATCTGCAGCAAGTCATTGGGAGATATGGCGGTTTACTTTGGTATGCTTGATGCCCTATTGGCTGCTGAGGAGCTTCCTGAAGAGTATAAGGACCGCTGTCAGGACATACTCTGCCATGACTGTGATCGGAAGGGCACTTCACGCTTCCATTGGTTGTATCACAAATGTGGATTTTGTGGCTCTTACAATACCCGAGTTATCAAGTGTGAGACGTCAAACTCGAGCTGCTCATAG 3711 0.4209 MATPLDGGGVAVLPNSVNNVDSASALNGSLKCSKPESPILIFLFFHKAIRNELDALHRLAVAFATGNRSDIKPLSERYHFLSSMYRHHCNAEDEVIFPALDIRVKNVAQTYSLEHKGESNLFDHLFELLNSSVNNDESFPRELASCTGALQTSVSQHMAKEEEQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMAEFLPWLSTSISPDESQDLRNCLIKIVPQEKLLQKVVFTWMEGRSSVNTVETCVDHSQVRCSSRSLTHQVEKVNCACESTTTGKRKHSGSMMDASDTTGTHPIDEILLWHNAIKKELSEIAVEARKIQHSGDFTNLSAFNERFQFIAEVCIFHSIAEDKVIFPAVDGEFSFFQEHAEEESQFNDFRRLIESIQSEGASSNSDVEFYSKLCTHADHIMETIQRHFHNEEVQVLPLARKHFSFRRQCELLYQSLCMMPLKLIERVLPWLVGSLTEDEAKMFQRNMQLAAPATDSALVTLFCGWACKARNEGLCLSSGASGCCPAQRLSDIEENIGRPSCACASALSNRHCSVLAESGGNKRPVKRNILESHKNEDLPETSETESIQKQCCSARSCWVPGLGVSSNNLGLSSLSTAKSLRSLSFSSSAPSLNSSLFIWETERSSCNIGSTQRPIDTIFKFHKAIRKDLEYLDVESGKLSDGDETILRQFNGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYMLDHKQEEQLFEDISCVLSEFSVLHEALQMTRMSENLSESNFGTSDANTSDDIKKYNELATKLQGMCKSIRVTLDQHLFREECELWPLFGRHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATKNTMFNEWLSECWKESPVSIAQTETSDHSTSQRGAEYQESLDHNDQMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLLTSRWIAAQQKSPKALSEGSSNSVEIEGLSPSFRDPDKHVFGCEHYKRNCKLRAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMRCLNIQPIGPICMTPSCNGFSMAKYYCNICKFFDDERNVYHCPFCNLCRVGRGLGIDYFHCMKCNCCLGIKSASHKCLEKGLEMNCPICCDDLFTSSATVRALPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYKDRCQDILCHDCDRKGTSRFHWLYHKCGFCGSYNTRVIKCETSNSSCS 1236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00189 1236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1116 1164 IPR013083 -
Pumo6g00189 1236 ProSiteProfiles Zinc finger CTCHY-type profile. 1056 1119 IPR017921 -
Pumo6g00189 1236 FunFam Zinc finger protein-related isoform 1 1115 1164 - -
Pumo6g00189 1236 SUPERFAMILY CHY zinc finger-like 986 1047 IPR037274 GO:0008270
Pumo6g00189 1236 Gene3D nmb1532 protein domain like 36 187 - -
Pumo6g00189 1236 Gene3D nmb1532 protein domain like 298 445 - -
Pumo6g00189 1236 ProSiteProfiles Zinc finger CHY-type profile. 984 1053 IPR008913 GO:0008270
Pumo6g00189 1236 Pfam CHY zinc finger 991 1066 IPR008913 GO:0008270
Pumo6g00189 1236 CDD Hr-like 298 427 - -
Pumo6g00189 1236 CDD Hr-like 646 806 - -
Pumo6g00189 1236 Pfam Ring finger domain 1119 1161 IPR001841 -
Pumo6g00189 1236 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 687 1233 - -
Pumo6g00189 1236 CDD Hr-like 41 167 - -
Pumo6g00189 1236 SMART ring_2 1120 1161 IPR001841 -
Pumo6g00189 1236 Pfam Hemerythrin HHE cation binding domain 43 169 IPR012312 -
Pumo6g00189 1236 Pfam Hemerythrin HHE cation binding domain 295 429 IPR012312 -
Pumo6g00189 1236 Pfam Hemerythrin HHE cation binding domain 644 807 IPR012312 -
Pumo6g00189 1236 SUPERFAMILY RING/U-box 1118 1165 - -
Pumo6g00189 1236 Pfam Zinc-ribbon 1167 1224 IPR039512 -
Pumo6g00189 1236 Gene3D nmb1532 protein domain like 640 883 - -
Pumo6g00189 1236 CDD RING-H2_Pirh2-like 1119 1162 - -
Pumo6g00189 1236 Gene3D - 1191 1232 - -
Pumo6g00189 1236 ProSiteProfiles Zinc finger RING-type profile. 1120 1162 IPR001841 -
Pumo6g00189 1236 SUPERFAMILY Zinc hairpin stack 1057 1113 IPR037275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00189 Pumo-Chr6 2308028 2319236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00189 1 1236 C2H2 Transcription Factor Family AT3G18290 67.911 0.0 1712
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00189 K16276 - gmx:100801725 2442.15