Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00184 ATGATCCACGGAGACAATGCTGCGGCGAGAAGTCATGTTGGAGCTCGTACGGTTTCAGCAGAAGAAAACTTTGGCACACCAATGTTGAATGAATTCAATGCAATTAATATGGCCTCTACGTATGCTATCATGACCGGGGACAAGAAATTTGGGAAGATTGGAGGGGGAATAAAAGGCAGCTTGGTGAAGGGGAGCTCTTGCAAGCGAAAACACTTGGTCCTCCTCATGTTCAAAGTTGCATTTGTTTGCTTTGTTTCTACCTTGTTTCTCTTTTCCACCACTGCCTCTGGCAGCCACAACACTTCATCCTCAACAACAACTTGTCCTATTAACAGCTGCAAAAATGGACCTAACATCAGTTACCCTTTTTGGCTTTCTCAAGGTTCCCTTCCTGACCAATATTGCGGTTACCAAGAACTTGGCTTTATTTGTGATGATGGTAACACCATTTTTTCTCCACCCCCCGGATTATACTATTACGTAAAAGACATAGACTATGCAAACCATAGACTTAAGCTCGTTGATTATGACACTGCAAACAAAACTTGTCCAAGGGCACTTCACAGTGTTCCCTTTGGCAACCTACCTCTTTCTCACTCCCCCTTGAACTTAAACCTCAGCTTTTACTACAACTGCAGTCGCTACCCTTCTGGTGTGCCTCCTATCAAGTGTCTCAGTTCTGGGGCAAACGAGTCTTTTGTGTTTCTGTTGGGGAACGAGACCAAAGGTTTTGACTGGTCCGGGAACTGCCAGGTAAACGTTGTGGTGACAGTGATGAAGGATCAGATCACAAGTGATACTCATGATGGCTTGATCAACCAGTTTGCTGGGGCCATGAATGAAGGCTTCGTGCTTGAATGGCAAACAGCTTCGTATTGCGTTGAGTGCGAGGCTAGTAATGGAACTTGTGGTTACAGTACCACCAGGAAGGAGACGCTGTGTTTCTGCAGAGATGGCAGCACAAGAAGCAATACATGTGAAGGGGAAAAGGGAAGCACAACCGGTTTGTCAAGGTTAATTATAGGTTTAATAATAGCTGGAGGAATTGGTGCACTGCTGATATGCATCCTACTTTACAGTTTTAGACAAAAAGTATCACTAATTGTGTCAGAAATTCGGAGGGCCAAAAAGATTGATCAAGCCATTGAAGCCTTCATCAGAAATAATGGACCTCTTCCCATAAAAAGATACTCATATTCAGAGATCAAGAAAATGACCAATTCTTTTGAATCCAAACTGGGACAAGGAGGTTATGGTCAAGTATATAAAGGAAATCTAAGCAACAACTCTCCTGTGGCAGTGAAGGTACTGAATGCTTCCAAAGGGAACGGGGAAGATTTTATCAACGAGGTTATAAGCATCAGTAGAACGTCCCATGTAAATATTGTTAATCTCCTTGGTTTTTGTCTTGAAGGCCAGAAGAAAGCACTTGTCTTCGATTATATGCCCAATGGATCACTTGAAAAGTTTATACACAACAAGAATTTGGAAACCAATCCACCTTTGAGTTGGGAAAGATTACACCACATTGCTGAAGGGATAGCTAAAGGACTGGAGTACTTGCATAGAGGGTGCAACACTCGGATACTACATTTTGACATAAAACCAAGCAACATCCTTTTGGACAAAAATTTCTGTCCCAAGATCTCTGATTTTGGGATGGCTAAGCTCTGCTCAAATACACAAAGTATCATATCTATGTATGGTGCTAGAGGGACAGTTGGGTATATTGCTCCTGAAGTGTGGAACAGAAACTTTGGAGGGGTGTCATATAAGTCTGATGTCTATAGTTATGGAATGATGATTTTGGAAATGGTTGGAGGAAGGCAAAATATCAGCATTGAAGCAAGTCATTCAAGTGAGACATATTTTCCTCACTGGATATACAAGCATGTTGAGGTGGGAAGCAATTTAGCATGGGATGAAGGTATGACCACAGAGGAAAATGAAATTTGTAAGAAAATGATTGTAGTAGGATTGTGGTGCATACAGACAATCCCATCTGAAAGGCCTCCTATGAGTAGGGTGGTTGAAATGTTAGAAGGAAGCATAGATCAGTTGCAAATTCCCCCAAAGCCATTCATATTTACTCCTACAAAAACCGAAGTGAATATTTGCACCACTAGTAGCAGTGATTGA 2139 0.4203 MIHGDNAAARSHVGARTVSAEENFGTPMLNEFNAINMASTYAIMTGDKKFGKIGGGIKGSLVKGSSCKRKHLVLLMFKVAFVCFVSTLFLFSTTASGSHNTSSSTTTCPINSCKNGPNISYPFWLSQGSLPDQYCGYQELGFICDDGNTIFSPPPGLYYYVKDIDYANHRLKLVDYDTANKTCPRALHSVPFGNLPLSHSPLNLNLSFYYNCSRYPSGVPPIKCLSSGANESFVFLLGNETKGFDWSGNCQVNVVVTVMKDQITSDTHDGLINQFAGAMNEGFVLEWQTASYCVECEASNGTCGYSTTRKETLCFCRDGSTRSNTCEGEKGSTTGLSRLIIGLIIAGGIGALLICILLYSFRQKVSLIVSEIRRAKKIDQAIEAFIRNNGPLPIKRYSYSEIKKMTNSFESKLGQGGYGQVYKGNLSNNSPVAVKVLNASKGNGEDFINEVISISRTSHVNIVNLLGFCLEGQKKALVFDYMPNGSLEKFIHNKNLETNPPLSWERLHHIAEGIAKGLEYLHRGCNTRILHFDIKPSNILLDKNFCPKISDFGMAKLCSNTQSIISMYGARGTVGYIAPEVWNRNFGGVSYKSDVYSYGMMILEMVGGRQNISIEASHSSETYFPHWIYKHVEVGSNLAWDEGMTTEENEICKKMIVVGLWCIQTIPSERPPMSRVVEMLEGSIDQLQIPPKPFIFTPTKTEVNICTTSSSD 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00184 712 Pfam Protein kinase domain 410 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00184 712 PANTHER RUST RESISTANCE KINASE LR10-RELATED 379 700 IPR045874 GO:0004672
Pumo6g00184 712 SUPERFAMILY Protein kinase-like (PK-like) 389 681 IPR011009 -
Pumo6g00184 712 FunFam PR5-like receptor kinase 482 692 - -
Pumo6g00184 712 ProSiteProfiles Protein kinase domain profile. 407 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00184 712 ProSitePatterns Protein kinases ATP-binding region signature. 413 435 IPR017441 GO:0005524
Pumo6g00184 712 Pfam Wall-associated receptor kinase galacturonan-binding 108 175 IPR025287 GO:0030247
Pumo6g00184 712 Gene3D Phosphorylase Kinase; domain 1 386 481 - -
Pumo6g00184 712 Pfam Wall-associated receptor kinase C-terminal 228 319 IPR032872 -
Pumo6g00184 712 Gene3D Transferase(Phosphotransferase) domain 1 482 689 - -
Pumo6g00184 712 SMART serkin_6 407 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00184 712 FunFam serine/threonine-protein kinase PBS1-like 376 481 - -
Pumo6g00184 712 ProSitePatterns Serine/Threonine protein kinases active-site signature. 529 541 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00184 Pumo-Chr6 2268120 2273306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00184 109 695 Receptor kinase-like Gene Family AT5G38260 40.523 3.76e-135 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Pumo6g00184 Pkinase 4.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00184 - - gmx:100781977 1066.99