Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00183 ATGCCAGGCTTCACCATTCAAATACCCTCAACTTTTCCATCCATCTATGTAACGATGACCACCCGTTCCTGTTCCTCCTTCCTTGCATCCATACTCACCATTGCTTTCTTCTTAACAACTTTGCCACAATCCTACTCTCAAGAGAACGACACGTACTCTATTTGCAGCCAACCATTCAGTTGTGGAACTCTCAGAAACATATCCTATCCTTTCTGGGGAGGGAACCGACCCCAGTTTTGTGGCCGCAATGGGTTCAAGCTCACGTGCATGCATAATCAAAACACTTCGGTTCAACTTGGTTCCCAAAAATTCAACGTACTAAACATTAACCACACGGCTTCCACCATGAGAATGGTGCGAACGGACCTTGTCTATGATCGCTGCTCTTCCAATTTCACCAACACTTCTCTGAGTGCCAGTCCCTTTAGTTTTCTACCCACCGTTCAGAATGTCACTGTATTCTACGAATGCCCTTCTGAGAATTCAGTTGTGGGAAACACTTTTACGTGCCAGAATGATAGTAATAAGCATGCTTTTTATGTGGTCAATGGAACTCAGCTGAAGCAGTTCCCAGACCTTCAGAAGTGTGGGGTTAGTGTTGGGGTGCAAGTTTCAGAGGGTGTTGTTTGGGACTCTGAGGGTGGAGTTGGGTCGCTGGAGAAAGCGCTGGATCAAGGGTTTGATGCGCGGTACGATGCAGAGTTGAGTTCTCAGTGCACAGCATGCAGGGATTCTGGAGGAGCATGTGGGACCAATGAGAATGATTCGGCTCAGTTTTCTTGTTATTGCTCGGGTGGAACTCGTGGTTCACTACTGTGCTCTACTCACAAAAGTGGAAGGAAGAGCAGAGTGTTGAAGCTGGTTTTAGGTTTCGTTGCTACTGGATTTGCACTACCTCTAATCGCTGTCATCATATGCCGTAACAAAGCTAGGATTTGGAAATTTATATTAATTCAAGTTGGTAAGATAAAAAGGAATGATCGAGTTATAGAAGCCTTCCTTGAAAGCCAGGGTTCTATGGGTCTAAAAAGATACAGTTTCTCCGATGTCAAGAAAATGACCGACTCCTTCAAAATTAAACTTGGAGAAGGTGGTTATGGTTCTGTATACAAAGGAAAATTACTCAATGGCTGCTCAGTGGCAGTGAAGATACTGAACGAGTCAAAAGAGAATGGCGAAGAGTTTATCAATGAGGTTGCTAGCATAAGCAAAACATCCCATGTTAACATTGTCTCTCTCCTTGGATTTTGTCTAGATGGAAGCAGAAAAGCTCTCATCTATGAGTTTATGTCCAATGGTTCACTTGAAAAGTACATTTACAAGAAGGCAGCGAAAACTGAAACAACAACTCCAACCTTGAGTTGGGAGAGGTTGCACCAGATTGCAAAAGGCATAGCTCGAGGACTTGAGTACTTGCACAAAGGATGCAACACTCGGATTCTGCATTTCGACATTAAGCCACATAACATCCTTTTGGACGAAAGATATCGGCCAAAGATATCAGATTTTGGGCTTGCTAAGCTGAGCACAAGAGATGAAAGCATTATTTCAATGTCAAATGCTAGAGGGACAGTAGGGTATGTGGCTCCCGAAGTGTTCAACAAAAGTTTTGGAGGTGTTTCACACAAGTCTGATGTTTACAGCTATGGAATGATGCTGCTAGAAATGGTTGGAGGGCAGAAGAACTTGGACGTTGAAGCTAGTCGCTCGAGTGAGATATATTTCCCACAATTGGTTATTTATAAGAAGCTTGAGCAGGGCAATGATTTGGGACTTGATGGGATATTGTCCGGTGAAGAAAATGAGATAGCAAAGAGAATGACTATGGTGGGTTTGTGGTGCATTCAGACAATTCCTTCTCATAGACCTACCATAAGTAGAGTGATTGACATGTTGGAAGGTAGTGTGGATTCCTTGGAAATGCCACCAAAACCTTTCCTCTCTTCTCCTCCAAGATCAACAACGGATTTTTCCACTGCAATATCCAAATCACTTGGCAGTGTCTGA 2007 0.4355 MPGFTIQIPSTFPSIYVTMTTRSCSSFLASILTIAFFLTTLPQSYSQENDTYSICSQPFSCGTLRNISYPFWGGNRPQFCGRNGFKLTCMHNQNTSVQLGSQKFNVLNINHTASTMRMVRTDLVYDRCSSNFTNTSLSASPFSFLPTVQNVTVFYECPSENSVVGNTFTCQNDSNKHAFYVVNGTQLKQFPDLQKCGVSVGVQVSEGVVWDSEGGVGSLEKALDQGFDARYDAELSSQCTACRDSGGACGTNENDSAQFSCYCSGGTRGSLLCSTHKSGRKSRVLKLVLGFVATGFALPLIAVIICRNKARIWKFILIQVGKIKRNDRVIEAFLESQGSMGLKRYSFSDVKKMTDSFKIKLGEGGYGSVYKGKLLNGCSVAVKILNESKENGEEFINEVASISKTSHVNIVSLLGFCLDGSRKALIYEFMSNGSLEKYIYKKAAKTETTTPTLSWERLHQIAKGIARGLEYLHKGCNTRILHFDIKPHNILLDERYRPKISDFGLAKLSTRDESIISMSNARGTVGYVAPEVFNKSFGGVSHKSDVYSYGMMLLEMVGGQKNLDVEASRSSEIYFPQLVIYKKLEQGNDLGLDGILSGEENEIAKRMTMVGLWCIQTIPSHRPTISRVIDMLEGSVDSLEMPPKPFLSSPPRSTTDFSTAISKSLGSV 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00183 668 SMART serkin_6 355 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00183 668 Pfam Protein kinase domain 360 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00183 668 ProSiteProfiles Protein kinase domain profile. 355 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00183 668 ProSitePatterns Protein kinases ATP-binding region signature. 361 383 IPR017441 GO:0005524
Pumo6g00183 668 FunFam PR5-like receptor kinase 430 644 - -
Pumo6g00183 668 Pfam Wall-associated receptor kinase galacturonan-binding 55 120 IPR025287 GO:0030247
Pumo6g00183 668 Gene3D Phosphorylase Kinase; domain 1 331 429 - -
Pumo6g00183 668 FunFam serine/threonine-protein kinase PBS1-like 324 429 - -
Pumo6g00183 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 480 492 IPR008271 GO:0004672|GO:0006468
Pumo6g00183 668 Pfam Wall-associated receptor kinase C-terminal 170 265 IPR032872 -
Pumo6g00183 668 PANTHER RUST RESISTANCE KINASE LR10-RELATED 327 650 IPR045874 GO:0004672
Pumo6g00183 668 SUPERFAMILY Protein kinase-like (PK-like) 335 633 IPR011009 -
Pumo6g00183 668 Gene3D Transferase(Phosphotransferase) domain 1 430 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00183 Pumo-Chr6 2260409 2266299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00183 54 667 Receptor kinase-like Gene Family AT1G66910 39.813 2.16e-143 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Pumo6g00183 Pkinase 1.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00183 - - gmx:100816285 1187.17