Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00180 ATGGACAAACTCTTTTTCATTGGATACTGTCTTCTTTATTCTCTTTTGGTTGTGCTTGTGCATGGCAAACAATTTTCATGCAATGAAACCCCCTACCCCCGTGTGTGCAAGCATTACATTGACACTACCAACACATTTTCAACCCTAGATGCTTCATCATCTTCTTCCTTCCATGATCTGGCCCTTAGTGTCACCATGGAGCAAGCCATTGTGGCTCATAAACTTGTCTCAAACATGGACTTGAATAATTTCAAGGACAAGCGAGCCAAGTCGGCTTGGGAAGATTGTTTGGAGCTCTATGAGGACACACTTTATCAACTCAAACGCTCAATGAACTCAAACAAACTAAATGATAGGTTGACCTGGCAAAGTGCATCCATTGCCAACCATCAAACATGCCAAAATGGTTTCACTGAATTCAACCTTCCCTCTCACCTAAACTACTTCCCCTCCATGTTAAGCAACTTCTCCAAATTGCTTAGCAATTCCTTGTCCATTAGCAAGGCTATGATGACTACTTTGACATCAACACCGACCAAACAAAGTGGTGGGCGAAGGTTGCTTTCAGATGGCTTCCCCTATTGGCTATCACATTCAGATAGAAGGCTTCTTCAAGAAACAACACCAAGAGCTGATGTTGTGGTGGCACAGGATGGGAGTGGGAACTATAAGACCATCTCAGAGGGCGTGGCTGCAGCTGCTAAGCTAAGTGGGAAAGGGCGTGTTGTTGTGCACGTCAAAGCTGGCATGTACAAAGAGAACATCGATATCAAGAGGACAGTGAAGAACTTAATGATCATTGGAGATGGGATGGGTGCTACTATTGTTACCGCCAATAATTTTAAAGGTGGTGGCGGCTCCTCCACTACTTTTCGTTCTGCTACTTTTGGACACACCCTGTTCTTCTTGTCCACGGAAGGAGGATATATGATAGTTGATAGATAG 945 0.4402 MDKLFFIGYCLLYSLLVVLVHGKQFSCNETPYPRVCKHYIDTTNTFSTLDASSSSSFHDLALSVTMEQAIVAHKLVSNMDLNNFKDKRAKSAWEDCLELYEDTLYQLKRSMNSNKLNDRLTWQSASIANHQTCQNGFTEFNLPSHLNYFPSMLSNFSKLLSNSLSISKAMMTTLTSTPTKQSGGRRLLSDGFPYWLSHSDRRLLQETTPRADVVVAQDGSGNYKTISEGVAAAAKLSGKGRVVVHVKAGMYKENIDIKRTVKNLMIIGDGMGATIVTANNFKGGGGSSTTFRSATFGHTLFFLSTEGGYMIVDR 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00180 314 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 26 170 IPR035513 -
Pumo6g00180 314 FunFam Pectinesterase 24 170 - -
Pumo6g00180 314 NCBIfam pectinesterase inhibitor domain 26 170 IPR006501 GO:0004857
Pumo6g00180 314 Gene3D - 210 307 IPR012334 -
Pumo6g00180 314 PANTHER PECTINESTERASE 14 297 - -
Pumo6g00180 314 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 171 IPR035513 -
Pumo6g00180 314 Pfam Pectinesterase 212 298 IPR000070 GO:0030599|GO:0042545
Pumo6g00180 314 SMART PMEI_2 15 166 IPR006501 GO:0004857
Pumo6g00180 314 CDD PMEI-like_3 26 172 - -
Pumo6g00180 314 Pfam Plant invertase/pectin methylesterase inhibitor 26 166 IPR006501 GO:0004857
Pumo6g00180 314 SUPERFAMILY Pectin lyase-like 207 296 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00180 Pumo-Chr6 2179988 2182725 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00180 26 297 Carbohydrate Esterase AT1G23200 44.518 5.35e-67 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00180 - - gmx:100816802 492.271