Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00179 ATGGACAAGCTCTTTTTCAACTGTTTCATTGGATACTGCCTTCTTTATTCTCTCTTGCTTGTGCATGGCAAACAATTGTCATGCAATGAAACCCCTTACCCCGGTGTGTGCAAGCATTACATTGAAACTACCAACACATTATCAACCCTGGATGTTTCATCATCTTCTTCCTTCCATGATGTGGCCCTTAAGGTCACCATGGAGCAAGCCATGGAGGCTTATAAACTTGTCTCAAACATGGACTTGAATAATTTCAAGGACAAGCGAGCCAAGTCTGCATGGCAAGATTGTTTGGAGCTCTATGAGAACACAATCTATCAGCTCAAACGCTCAATGAACTCAAACAATCTAAATGATAGGTTGACTTGGCAAAGTGCATCCATTGCCAACCATCAAACATGCCAAAACGGTTTCACTGAATACAACCTTCCCTCACACCTAAACTACTTCCCCTCCATGTTAAGCAACTTCTCCGAATTGCTTAGCAATTCCTTGTCCATTAGCAACGCTATGACTTTGACATCATTGTCATCATCACCATCGACCAAACAAGGTGGTGGGCGAAAGTTGCTTTTAGATGGCTTCCCCTATTGGCTGTCACATTCAGATAGAAGGCTTCTTCAGGAAACAACAAAAGCTGATGTTGTGGTGGCACAGGATGGGAGTGGTAACTATAAGACTATCTCTGAGGGTGTAGCTGCTGCTTCTAAACTCAGTGGGAAAGGGCGTGTCGTTGTGCACGTCAAAGCTGGCGTATACAAAGAGAATATTGATATCTCGAGGTCAGTGAAGAACTTAATGATCATTGGAGATGGGATGGGTGCTACTATTGTTACTGGTAATCGTAACGCACAAGATGGTTCCACTACTTTTCGTTCAGCTACTTTTGGTGCTGCTGAAAGAAAAGGAATGAAGTGTTAA 921 0.43 MDKLFFNCFIGYCLLYSLLLVHGKQLSCNETPYPGVCKHYIETTNTLSTLDVSSSSSFHDVALKVTMEQAMEAYKLVSNMDLNNFKDKRAKSAWQDCLELYENTIYQLKRSMNSNNLNDRLTWQSASIANHQTCQNGFTEYNLPSHLNYFPSMLSNFSELLSNSLSISNAMTLTSLSSSPSTKQGGGRKLLLDGFPYWLSHSDRRLLQETTKADVVVAQDGSGNYKTISEGVAAASKLSGKGRVVVHVKAGVYKENIDISRSVKNLMIIGDGMGATIVTGNRNAQDGSTTFRSATFGAAERKGMKC 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00179 306 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 171 IPR035513 -
Pumo6g00179 306 SMART PMEI_2 16 167 IPR006501 GO:0004857
Pumo6g00179 306 Pfam Pectinesterase 214 300 IPR000070 GO:0030599|GO:0042545
Pumo6g00179 306 FunFam Pectinesterase 25 171 - -
Pumo6g00179 306 Gene3D - 208 304 IPR012334 -
Pumo6g00179 306 SUPERFAMILY Pectin lyase-like 210 297 IPR011050 -
Pumo6g00179 306 CDD PMEI-like_3 26 171 - -
Pumo6g00179 306 Pfam Plant invertase/pectin methylesterase inhibitor 27 167 IPR006501 GO:0004857
Pumo6g00179 306 PANTHER PECTINESTERASE 19 300 - -
Pumo6g00179 306 NCBIfam pectinesterase inhibitor domain 27 171 IPR006501 GO:0004857
Pumo6g00179 306 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 172 IPR035513 -
Pumo6g00179 306 ProSitePatterns Pectinesterase signature 1. 240 259 IPR018040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00179 Pumo-Chr6 2166626 2168966 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00179 4 299 Carbohydrate Esterase AT1G23200 42.593 4.74e-73 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00179 - - gmx:100817350 504.982