Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00166 ATGTCTTTCAAGGCTTCTCAAGATGATAAGACTAAGAAGATAGTGTCTGATCCCTTAACATCTGCTGGGTTTATGTCTATCTTAAGTCAAGATGCATTTGACTCTAGTCAGAAGCGCTCTGCTGGTGAACCCCAGAAATCTTTCAATCACGATGGGCAAGGTGGCCTTCATTTTTCGCTGACTCCATATCCTGTACAACATGATGTGAATTCTGTGAATCGTCCTCATGATGTGAAGATGTTTCCAGTTCCCAATCAAGCAATTTCAGTTTCCTTGGGGAATCCATTCCTGAAGAATCATTTTGCAACTGCTGGTCAGAATATGAATGGCACCAATGTGAAGCAGTCATTACTTGGGGGAATACCTGTTACAGCGCCTCATTCAGTTCTTCCCTCTGTTGGTGCTGTTGCTGGAATGACTGAATCATGTGTGAAACCATCTGCGCCTTCTGCCCAACTTACCATCTTCTATGCGGGTACTGTCAATGTCTTTGATGATATCTCCGCCGAGAAGGCACAAGCTATCATGTTGTTGGCTGGCAAGAGCTTATCTGCAGCTTCTAACATGGCGCAGCCAAAAGTTCAGGTGCCTGTCTCAAAGTTGGCTGCTGGTGATGGTGTGCCTGTGAGTCAACCTGCAAATACATCACCCGGCTCTGGTCTTTCAAGTCCTTTATCTGTTTCTTCACATACCGGTGTCCAGTCAGGGAGTGGCTCAACTAGCACTGATGAATTCCTTGCTGCTAAAACAACTGGAGTTCCCACCACTCCTGTTAGCAATGTGGAGCCTCCAAAGGTAGTCAGTGCCACCACTATGTTGTCATCAGCTGTACCTCAGGCTCGGAAAGCATCCTTGGCTCGATTTTTAGAAAAACGCAAAGAAAGGGTGATGAGTGCAGCACCATACAACCTGAACAAGAAGTCTGAAGAGTTTGCCAGTGCAGAATACGCTGGTGCTAACTTTTCTGCAGGTCTTGGAGGGATCGCTTTTTATACAAGCAAAGACAGAAGGGTTAAGCGGATGAGACGTCCTCCGCTCCATTATGATTCACCAAGAATATTGGTAGCAATTGTGTTAGCAGTGCTCCTTTTATGTTACTGCTGGACACATTCAACTTTCATGGCTGTGCTGCTGCTTTTCTTCATGCTGCCACTTTCTATTTCTGCATCTGGGGATGCTTTTATTGGTGTCAACATTGGTTCAGATATATCTGACATGCCAGGTCCAACAGAGATTGTTGCTCTTCTGAAGGCTCAAAGTATCCAACATGTCAGACTCTATGATGCTGACCGAGCCTTACTTCTTGCACTTGCCAACACAGGAATCCGTGTAACTGTTTCTGTTCCCAATGACCAGCTACTTGGCATTGGTCAGTCCAATGCCACTGCAGCAAACTGGGTTACTCGAAATGTCATAGCTCATGTTCCTGCTACCAACATCACTGCCATATGTGTTGGATCTGAGGTCCTAACTACCCTCCCAAATGCAGCCCCTATTCTAGTCTCTGCCATAAATTTCATTCACTCTGCTCTTGTTGCTGCTAATCTAGACCAGCAAATTAAAGTCTCTAGTCCTCACTCTTCTTCTATCATCCTTGACTCTTTCCCACCTTCCCAAGCATTTTTCAACCGTACATGGAATCCAGTCATGGTTCCCATGCTTAAATTTTTGCAATCAACAGGTTCATATCTTATGCTCAATGTGTATCCATATTATGATTACCAGCAGTCCAATGGTGTAATCCCACTGGATTATGCTTTATTCCGCCCCCTACCTCCAAATAAGGAAGCTGTTGATTCCAACACTCTGCTGCATTATACTAATGTTTTTGATGCAGTTGTCGATGCTGCTTATTTTGCAATGTCGGATTTGAACTTCACCAATATTCCTATTCTGGTGACTGAGTCAGGATGGCCCTCCAAAGGTGACTCATCTGAACCTGATGCAACTGTTGATAATGCTAACACTTACAACAGTAACTTGATCAGACACGTCCTTAACAATACGGGGACTCCTAAACATCCTGGAATTGCAGTTAGTACATATATTTATGAGCTTTATAATGAAGACTTAAGATCAGGTCCAGTCTCAGAAAAGAACTGGGGGCTATTTTATGCTAATGGAGAACCAGTGTATACCTTACACTTGACTGGTGCTGGTATTATATTTGCAAATGATACAACAAACCAAACCTTTTGTGTCACAAAGAGTAATGCTGACCCTAAGATGTTACAGGCAGCACTTGATTGGGCTTGTGGACCAGGGAAGGTGGATTGTTCCCCTTTGCTGCAGGGTCAACCATGTTATGAACCTGATAATGTAGTTGCACATTCTACATATGCTTTCAATGCATATTATCAGAAGATGGATAAATCTCCTGGGAGTTGTGATTTCAAAGGGGTTGCCACTATCACTACCACAGACCCAAGTCATGGTTCTTGTATATTTCCAGGAAGTCATGGTAGAAAGGGAAGCAGAACAAATGGCACATCACTGGCCCCATCTAATTCCACAAGTTCGGGCTGCTTGTCCCAATACTACTACAATGGTGGATTTTTCACAAGCTCGTTGGTTCTAGTTCTACTTTTGTGTGCAGTTGTGTAA 2604 0.4386 MSFKASQDDKTKKIVSDPLTSAGFMSILSQDAFDSSQKRSAGEPQKSFNHDGQGGLHFSLTPYPVQHDVNSVNRPHDVKMFPVPNQAISVSLGNPFLKNHFATAGQNMNGTNVKQSLLGGIPVTAPHSVLPSVGAVAGMTESCVKPSAPSAQLTIFYAGTVNVFDDISAEKAQAIMLLAGKSLSAASNMAQPKVQVPVSKLAAGDGVPVSQPANTSPGSGLSSPLSVSSHTGVQSGSGSTSTDEFLAAKTTGVPTTPVSNVEPPKVVSATTMLSSAVPQARKASLARFLEKRKERVMSAAPYNLNKKSEEFASAEYAGANFSAGLGGIAFYTSKDRRVKRMRRPPLHYDSPRILVAIVLAVLLLCYCWTHSTFMAVLLLFFMLPLSISASGDAFIGVNIGSDISDMPGPTEIVALLKAQSIQHVRLYDADRALLLALANTGIRVTVSVPNDQLLGIGQSNATAANWVTRNVIAHVPATNITAICVGSEVLTTLPNAAPILVSAINFIHSALVAANLDQQIKVSSPHSSSIILDSFPPSQAFFNRTWNPVMVPMLKFLQSTGSYLMLNVYPYYDYQQSNGVIPLDYALFRPLPPNKEAVDSNTLLHYTNVFDAVVDAAYFAMSDLNFTNIPILVTESGWPSKGDSSEPDATVDNANTYNSNLIRHVLNNTGTPKHPGIAVSTYIYELYNEDLRSGPVSEKNWGLFYANGEPVYTLHLTGAGIIFANDTTNQTFCVTKSNADPKMLQAALDWACGPGKVDCSPLLQGQPCYEPDNVVAHSTYAFNAYYQKMDKSPGSCDFKGVATITTTDPSHGSCIFPGSHGRKGSRTNGTSLAPSNSTSSGCLSQYYYNGGFFTSSLVLVLLLCAVV 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00166 867 SMART X8_cls 731 816 IPR012946 -
Pumo6g00166 867 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 380 805 IPR044965 GO:0004553|GO:0005975
Pumo6g00166 867 Pfam Glycosyl hydrolases family 17 395 715 IPR000490 GO:0004553|GO:0005975
Pumo6g00166 867 Pfam Jas motif 278 302 IPR018467 -
Pumo6g00166 867 Gene3D Glycosidases 394 720 - -
Pumo6g00166 867 ProSiteProfiles Tify domain profile. 146 181 IPR010399 -
Pumo6g00166 867 MobiDBLite consensus disorder prediction 207 244 - -
Pumo6g00166 867 Pfam X8 domain 732 803 IPR012946 -
Pumo6g00166 867 FunFam Glucan endo-1,3-beta-glucosidase 4 726 820 - -
Pumo6g00166 867 MobiDBLite consensus disorder prediction 35 54 - -
Pumo6g00166 867 Pfam tify domain 148 180 IPR010399 -
Pumo6g00166 867 ProSitePatterns Glycosyl hydrolases family 17 signature. 629 642 IPR000490 GO:0004553|GO:0005975
Pumo6g00166 867 Gene3D - 725 817 - -
Pumo6g00166 867 MobiDBLite consensus disorder prediction 209 244 - -
Pumo6g00166 867 FunFam Glucan endo-1,3-beta-glucosidase 3 394 719 - -
Pumo6g00166 867 SUPERFAMILY (Trans)glycosidases 395 715 IPR017853 -
Pumo6g00166 867 SMART tify_2 146 181 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00166 Pumo-Chr6 1956844 1971582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00166 392 810 Glycoside Hydrolase AT2G01630 78.998 0.0 710
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Pumo6g00166 Glyco_hydro_17 8.4e-78 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00166 K19891 - gmx:100778217 941.414