Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00159 ATGGCCCTCATTAAGAAGCTCCGCAAAGCGAAAAGGGAAGCGCCACCAGGTGAGAAGCCAGAACCAGTCCGCACCCACCTCCGCAACATGATTATTGTGCCTGAGATGATTGGTAGCATTATTGGAGTTTACAATGGCAAGACCTTTAACCAGGTTGAAATCAAGCCCGAGATGATTGGGCATTATCTGGCAGAGTTCTCTATTTCATACAAACCCGTTAAGCACGGGAGACCTGGTATTGGTGCTACTCACTCATCCAGGTTCATTCCTCTTAAGTGA 279 0.4767 MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00159 92 Hamap 30S ribosomal protein S19 [rpsS]. 6 81 IPR002222 GO:0003735|GO:0005840|GO:0006412
Pumo6g00159 92 ProSitePatterns Ribosomal protein S19 signature. 45 69 IPR020934 GO:0003723
Pumo6g00159 92 FunFam 40S ribosomal protein S15 1 92 - -
Pumo6g00159 92 NCBIfam 30S ribosomal protein S19 2 92 IPR005713 GO:0003735|GO:0006412|GO:0015935
Pumo6g00159 92 Gene3D 30s Ribosomal Protein S19; Chain A 1 92 IPR023575 GO:0003735|GO:0005840|GO:0006412
Pumo6g00159 92 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 1 92 IPR002222 GO:0003735|GO:0005840|GO:0006412
Pumo6g00159 92 SUPERFAMILY Ribosomal protein S19 3 76 IPR023575 GO:0003735|GO:0005840|GO:0006412
Pumo6g00159 92 PRINTS Ribosomal protein S19 family signature 25 44 IPR002222 GO:0003735|GO:0005840|GO:0006412
Pumo6g00159 92 PRINTS Ribosomal protein S19 family signature 57 72 IPR002222 GO:0003735|GO:0005840|GO:0006412
Pumo6g00159 92 PRINTS Ribosomal protein S19 family signature 45 57 IPR002222 GO:0003735|GO:0005840|GO:0006412
Pumo6g00159 92 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 2 92 IPR002222 GO:0003735|GO:0005840|GO:0006412
Pumo6g00159 92 MobiDBLite consensus disorder prediction 1 23 - -
Pumo6g00159 92 Pfam Ribosomal protein S19 2 75 IPR002222 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00159 Pumo-Chr6 1858967 1860682 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00159 1 92 Cytoplasmic Ribosomal Protein Gene Family AT5G09510 97.826 1.18e-62 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00159 K02958 - mnt:21399403 189.119