Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00146 ATGGCCGAACGTGGAGGCGGAGACCGTGGCGGCTTCGGTCGCGGCTTTGGCGGTCGTGGACGTGGCGACAGAGGGCGCGGCGGGCGTCGCAGGGCAGGAGGGCGGCGCGAGGAGGAGGAGAAGTGGGTCCCAGTGACGAAACTGGGACGGCTGGTGAAGGAGGGGAAAATTCGTAGCCTGGAGCAGATCTACCTGCACTCGCTCCCAATCAAGGAGCACCAAATCATTGACACCCTGGTGGGTCCCTCCCTCAAGGACGAGGTCATGAAGATCATGCCCGTCCAGAAGCAGACCCGTGCAGGTCAGCGAACCCGCTTCAAGGCCTTCGTCGTCGTCGGTGACAACAATGGCCACGTCGGCCTCGGCGTTAAGTGCAGCAAGGAAGTCGCCACCGCCATTCGCGGTGCCATTATCCTCGCTAAGCTCTCTCTTATTCCTGTTAGGAGAGGGTACTGGGGTAACAAGATCGGAAAGCCCCACACCGTTCCCTGCAAGGTTACTGGAAAGTGCGGTTCCGTCACAGTCCGCATGGTCCCCGCCCCTCGTGGCTCTGGTATCGTCGCCGCTAGGGTTCCCAAGAAGGTCTTGCAGTTCGCTGGAATCGAAGATGTCTTCACATCCTCCAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAGGCTACTTTTGACTGTCTGCTGAAAACCTACGGTTTTCTAACACCAGAATTCTGGAGGGAGACTCGCTTCTCGAAATCACCATTCCAAGAGTACACAGATCTATTGGCAAAGCCTACAGGAAAGGCCCTTATCCTCGAGGAGGAAAGAGTCGAGGCTTGA 819 0.5775 MAERGGGDRGGFGRGFGGRGRGDRGRGGRRRAGGRREEEEKWVPVTKLGRLVKEGKIRSLEQIYLHSLPIKEHQIIDTLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGAIILAKLSLIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFSKSPFQEYTDLLAKPTGKALILEEERVEA 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00146 272 SUPERFAMILY dsRNA-binding domain-like 80 149 - -
Pumo6g00146 272 FunFam 40S ribosomal protein S2 147 240 - -
Pumo6g00146 272 PANTHER RIBOSOMAL S SUBUNIT 36 230 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pumo6g00146 272 FunFam 40S ribosomal protein S2 41 146 - -
Pumo6g00146 272 Pfam Ribosomal protein S5, C-terminal domain 168 240 IPR005324 GO:0003735|GO:0005840|GO:0006412
Pumo6g00146 272 Pfam Ribosomal protein S5, N-terminal domain 84 148 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pumo6g00146 272 NCBIfam 30S ribosomal protein S5 37 244 IPR005711 GO:0003735|GO:0006412|GO:0015935
Pumo6g00146 272 MobiDBLite consensus disorder prediction 1 39 - -
Pumo6g00146 272 SUPERFAMILY Ribosomal protein S5 domain 2-like 160 240 IPR020568 -
Pumo6g00146 272 ProSiteProfiles S5 double stranded RNA-binding domain profile. 84 147 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pumo6g00146 272 Gene3D - 147 239 IPR014721 -
Pumo6g00146 272 ProSitePatterns Ribosomal protein S5 signature. 101 133 IPR018192 -
Pumo6g00146 272 Gene3D - 41 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00146 Pumo-Chr6 1663793 1665142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00146 38 260 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 91.031 2.99e-152 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00146 K02981 - gmx:100797105 477.633