Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00144 ATGGTGACAAGAAGAAAGTTCCTCAACTTGTTATCAACCCTAAACGTTTCCGAGCTAATTCCCCAGCACGCCAATGCATTATTTCAACACCCCCACAACCCCTTTTCCAAAACCCTTAGGGTTTACGGAACCCAAGCATCAGCATCGAAACTCCCCGAATACGAGATGCCATCGGTGACATGGGGCGTGATCCAGGGTCGCAAGGAGAAGCTAGTCTCGCGAGTAATCATCTTCGATTACCTCAAGTCTTTAGGAATCATCCCCGACGAGTTGCACGACCTCGAACTTCCCTCCACCGTCGAAGTCATGCGCGAGCGCGTCGAGTTTCTCCAAAAATTAGGTCTAACCGTCGACGACATCAACAATTACCCTTTAATGTTAGGTTGCAGTGTCAGAAAAAACATGATCCCTGTGTTGGGGTACTTGGAAAAAATTGGGATTGCAAGGCCCAAGCTTGGGGGATTCGTTAAGAATTACCCGCAGGTTTTTCATGCTAGTGTCATTGTTGAGCTTGCTCCTGTTGTTAAGTTCCTTAGAGGGCTTGATGTGGAGAAAGATGATATTGGGTATGTTTTGCAAAAGTACCCTGAGCTTCTTGGCTTCAAGCTTGAGGGTACTATGAGCACTTCAGTGGCTTATCTTGTTAGTATTGGTGTGAATCCTAGAGATATTGGTCCAATGGTCACTCAGTATCCTTATTTCTTAGGGATGAGAGTTGGGACTGTGATAAAGCCGATGATTGATTACTTGGTCGATTTAGGGCTGCCGAAGAAGGTTTTGGCAAGGATGTTGGAGAAGAGAGCTTATATTCTTGGCTATGATCTTGAGGAAACTGTGAAACCCAATGTGGAATGTTTGATAAGTTTTGGTGTGAGGAGGGAGTGTTTGGCTTCGGTTATTGCTCAATATCCGCAGATTCTTGGGCTGCCTCTTAAGGCTAAGTTGTCCTCACAGCAGTACTTTTTCAGCTTGAAGCTTAAGGTTGACCCTGAAGGGTTTGCACACGTGGTGGAGAACATGCCACAGGTGGTTAGCCTCCACCAACATGTGATTATGAAGCCAGTTGAGTTCCTCCTTGGAAGGACGATACCCTCGCAGGACGTGGCGAGTATGGTGATCAAGTGTCCTCAGTTGGTGGCACTGAGAGTTGAGCTCATGAAGAACAGCTATTACTTCTTCAAGAGTGAGATGGGGAGGCCCTTGCAAGAGCTTGTGGAATTCCCGGAGTACTTTACTTATAGTTTGGAGTCCAGGATCAAACCCAGATACCAGAGGCTGAAGAGTAAAGGGATAAGGTGTTCCTTGAATTGGATGCTGAACTGTAGTGACCAGAGGTTTGAAGAGAGGTTGCAGGGTCATTACATTGAAACTGAAAGTGTAGGTCCCAGATTCTGTATGGGAGGGAAATTAGAGCTACCAGGGAATGGCATAGTGTCAGACTGA 1443 0.4636 MVTRRKFLNLLSTLNVSELIPQHANALFQHPHNPFSKTLRVYGTQASASKLPEYEMPSVTWGVIQGRKEKLVSRVIIFDYLKSLGIIPDELHDLELPSTVEVMRERVEFLQKLGLTVDDINNYPLMLGCSVRKNMIPVLGYLEKIGIARPKLGGFVKNYPQVFHASVIVELAPVVKFLRGLDVEKDDIGYVLQKYPELLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPYFLGMRVGTVIKPMIDYLVDLGLPKKVLARMLEKRAYILGYDLEETVKPNVECLISFGVRRECLASVIAQYPQILGLPLKAKLSSQQYFFSLKLKVDPEGFAHVVENMPQVVSLHQHVIMKPVEFLLGRTIPSQDVASMVIKCPQLVALRVELMKNSYYFFKSEMGRPLQELVEFPEYFTYSLESRIKPRYQRLKSKGIRCSLNWMLNCSDQRFEERLQGHYIETESVGPRFCMGGKLELPGNGIVSD 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00144 480 Gene3D Transcription termination factor 3, mitochondrial 244 457 IPR038538 -
Pumo6g00144 480 Gene3D Transcription termination factor 3, mitochondrial 106 243 IPR038538 -
Pumo6g00144 480 FunFam Transcription termination factor MTERF4, chloroplastic 241 455 - -
Pumo6g00144 480 PANTHER CGI-12 PROTEIN-RELATED 142 270 IPR003690 GO:0003690|GO:0006355
Pumo6g00144 480 FunFam Transcription termination factor mterf4, chloroplastic 103 240 - -
Pumo6g00144 480 Pfam mTERF 139 447 IPR003690 GO:0003690|GO:0006355
Pumo6g00144 480 SMART mt_12 297 329 IPR003690 GO:0003690|GO:0006355
Pumo6g00144 480 SMART mt_12 117 148 IPR003690 GO:0003690|GO:0006355
Pumo6g00144 480 SMART mt_12 334 364 IPR003690 GO:0003690|GO:0006355
Pumo6g00144 480 SMART mt_12 401 432 IPR003690 GO:0003690|GO:0006355
Pumo6g00144 480 SMART mt_12 261 292 IPR003690 GO:0003690|GO:0006355
Pumo6g00144 480 SMART mt_12 369 400 IPR003690 GO:0003690|GO:0006355
Pumo6g00144 480 SMART mt_12 225 256 IPR003690 GO:0003690|GO:0006355
Pumo6g00144 480 SMART mt_12 153 184 IPR003690 GO:0003690|GO:0006355
Pumo6g00144 480 SMART mt_12 189 220 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00144 Pumo-Chr6 1651064 1652792 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Pumo6g00144 mTERF 3.2e-107 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00144 K15032 - gmx:100809590 890.567