Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00140 ATGGCCAAAATTCCCACTGAGGAAAAGGTTCCTAATCAATTCCCAGTAGGTCTCAAGGTCCTTGCGATTGATAATGATTCAACTGCTCTTGAAAACGTTAAGCAAATGTGTAATGGATGCCATTATCAAGTTATGACATACTCTAATGCTCTACATGCATTGGATCGTGTGCGGGAAAACAAAGATTGTTTTGATGTGATACTCATTGATGTTCATATGCCAAACATGGATGGCTATGAATTCCTTCAGCATATGCGGAAGGAAATTGACGTTCCTGTTATCGTGATGTCTTTTGATGATTCTACGAGCACTAAGATGGAGGCTATTAAACATGGGGCTTGTGATTATTGGAAAAAGCCTTTGCATGAGGAACAATTCAGGAATATGTGGATGCATGTTGCTAGGAAAGCCTGGAATGAGAATAAACTAGAAACAAAATGTGGCAGCAGCTTGGAAGATGATGATAAGAAAAAACGGGGGAATGATGATATTGAAGCAACAGGAGTGAGGGACCAAAAAAGGAGCAATTCCAAAGAATCTGATGTTGATGAAGCAGATGATTGTACTTATGCACCCCCAGCAAAGAAGCCCCGTGTAATATGGACAGAGAACCTGCATAGCAAATTTGAAAACGCTGTAACGCAACTTGGGATTGACAATGCCCAGCCAAAGAGAATTCTTGAATTGATGAACACCCTCTGGTTTGACAAGAGAAAATGTTGCTAG 726 0.405 MAKIPTEEKVPNQFPVGLKVLAIDNDSTALENVKQMCNGCHYQVMTYSNALHALDRVRENKDCFDVILIDVHMPNMDGYEFLQHMRKEIDVPVIVMSFDDSTSTKMEAIKHGACDYWKKPLHEEQFRNMWMHVARKAWNENKLETKCGSSLEDDDKKKRGNDDIEATGVRDQKRSNSKESDVDEADDCTYAPPAKKPRVIWTENLHSKFENAVTQLGIDNAQPKRILELMNTLWFDKRKCC 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00140 241 Gene3D - 18 191 - -
Pumo6g00140 241 CDD REC_typeB_ARR-like 20 134 - -
Pumo6g00140 241 NCBIfam myb-like DNA-binding domain, SHAQKYF class 196 232 IPR006447 GO:0003677
Pumo6g00140 241 MobiDBLite consensus disorder prediction 149 189 - -
Pumo6g00140 241 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 237 IPR045279 GO:0009736
Pumo6g00140 241 SMART REC_2 18 130 IPR001789 GO:0000160
Pumo6g00140 241 SUPERFAMILY CheY-like 17 144 IPR011006 -
Pumo6g00140 241 Gene3D - 193 239 - -
Pumo6g00140 241 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Pumo6g00140 241 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Pumo6g00140 241 SUPERFAMILY Homeodomain-like 194 231 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00140 Pumo-Chr6 1611165 1612183 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00140 14 231 Response Regulator Gene Family AT4G16110 41.991 3.51e-54 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pumo6g00140 Response_reg 3.1e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00140 - K14491 gmx:121174869 292.352