Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00139 ATGAAAATAATAAGATACAAAACTTGGAAGTTGACTGAGCGGAGGAGAAAAAGGGGGGTTGATGATTCTATATTTTCTTCTTCTTCTTCTTCTTCTTCTGTTGTTAGAGACCAAAGCAATAATATCAGTTCCAAAGAAGCTGATGATGATGTTGATGAATCGGAGCATTGTGGTCCCTCAATAAAGAAGTCCCGTGTAATATGGTCACCAGAACTGCATCGAGATTTCGTCAGGGCTTTCAATAAACTTGGGCTTGAACAGGCTGTGCCAAAGAGAATTCACGAAGAGATGATGAATGTCCCTGGTTTGACAAGAGAGAGTGTTGCTAGTCATTTACAGAAATATAGACATTATTTGAAGACCAAATCTGAGGGAGTGACAGAGAGACAGAGACAGGAACACAATGAGACGCCATTGCCTAACGTGGTTCAAGGGGCTATAGAATCCAGGGTAGGTGCATCTGAAAGATTCCACTTACAACCTTTGGCTGCTACTAGCCATGTTACCTATCAAACACTGGAAGGCCCTTTCAATGCTGAACAAGCTTTAGCATATGTTTGTCAGTCTCTCAGGACTCTAGTTGATCCATCTAGATATGGAGCAAGGCCCCCATCTAATGCAGTGGCTATTCAGACAAACAATGTGTTAGTGGGAACATTGCAGCAGCAGCAGCAGCAACAATGGCAGCAGCAGCAGCAAGGGTTACTGATGCAGCAGCAAAGGTTCCTGATGCATCAACAAATTCCTCCAATCAATTTTCAGCAATCTTCCATGATGACTTCTGGAAATCCAGCTTCTGTCTCCAGGAATATTGATTACAGTTTACTATCACCTCAGTCTAGTAATTCATTCAGTAACACCGGAGGTGGAGCCATTTTCAATCGGTATACTACTACTACAACTTCCATTTCCCAACAGCTTCAAAACACAAGTTTGACAAGTGGTGCTGCGAGAGCTATTCCTGCATCGTCAGTGTCTCCCTATGGTTCTAGAGCTGGTATTTCGCTTTATCAAGAGGCTCCTAACTCATCTGCAAGTGGTTTTAGTACTAACCAAAATTTCTCCACAGATATTGATGATAACACAACAAGGGAGGAGCCAAATTCTATGAATAATATGGAGGATCACACGGGCTGA 1137 0.4248 MKIIRYKTWKLTERRRKRGVDDSIFSSSSSSSSVVRDQSNNISSKEADDDVDESEHCGPSIKKSRVIWSPELHRDFVRAFNKLGLEQAVPKRIHEEMMNVPGLTRESVASHLQKYRHYLKTKSEGVTERQRQEHNETPLPNVVQGAIESRVGASERFHLQPLAATSHVTYQTLEGPFNAEQALAYVCQSLRTLVDPSRYGARPPSNAVAIQTNNVLVGTLQQQQQQQWQQQQQGLLMQQQRFLMHQQIPPINFQQSSMMTSGNPASVSRNIDYSLLSPQSSNSFSNTGGGAIFNRYTTTTTSISQQLQNTSLTSGAARAIPASSVSPYGSRAGISLYQEAPNSSASGFSTNQNFSTDIDDNTTREEPNSMNNMEDHTG 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00139 378 Gene3D - 61 121 - -
Pumo6g00139 378 MobiDBLite consensus disorder prediction 20 58 - -
Pumo6g00139 378 MobiDBLite consensus disorder prediction 359 378 - -
Pumo6g00139 378 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 33 349 IPR044841 GO:0003700|GO:0006355
Pumo6g00139 378 FunFam Two-component response regulator 60 123 - -
Pumo6g00139 378 MobiDBLite consensus disorder prediction 341 378 - -
Pumo6g00139 378 MobiDBLite consensus disorder prediction 23 41 - -
Pumo6g00139 378 Pfam Myb-like DNA-binding domain 68 116 IPR001005 -
Pumo6g00139 378 MobiDBLite consensus disorder prediction 42 58 - -
Pumo6g00139 378 MobiDBLite consensus disorder prediction 341 358 - -
Pumo6g00139 378 NCBIfam myb-like DNA-binding domain, SHAQKYF class 63 117 IPR006447 GO:0003677
Pumo6g00139 378 SUPERFAMILY Homeodomain-like 61 120 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00139 Pumo-Chr6 1605461 1607145 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00139 20 173 Response Regulator Gene Family AT3G16857 42.857 4.71e-24 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pumo6g00139 Myb_DNA-binding 4.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00139 - K14491 gmx:102659569 332.798