Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00138 ATGGCCAAAGTTTCCTCCGACGAGAAGGTTCTCAATGAATTACCAGTAATTAGGGTCCTTGCCATTGATAACGACCCCACAGTTCTTGAGTTCATCAAGAACACATGCAATCAATGCAAATATGAAGTTATCATATGCACTGAATCTCCATTTGCTTTGAATCTTGTGCGGGAAAGAAAAGATTGCGTTGATGTGATACTCATGGAGGTTCATATGCCAAACATGAATGGCTATGAATTCCTTCAGCATGCCAGAAAGGAAATTAATGTTCCTGTTATCAGTATGTAA 288 0.3924 MAKVSSDEKVLNELPVIRVLAIDNDPTVLEFIKNTCNQCKYEVIICTESPFALNLVRERKDCVDVILMEVHMPNMNGYEFLQHARKEINVPVISM 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00138 95 ProSiteProfiles Response regulatory domain profile. 18 95 IPR001789 GO:0000160
Pumo6g00138 95 SUPERFAMILY CheY-like 17 94 IPR011006 -
Pumo6g00138 95 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 95 IPR045279 GO:0009736
Pumo6g00138 95 Pfam Response regulator receiver domain 19 94 IPR001789 GO:0000160
Pumo6g00138 95 Gene3D - 15 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00138 Pumo-Chr6 1604874 1605253 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00138 17 95 Response Regulator Gene Family AT4G16110 39.241 1.12e-17 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pumo6g00138 Response_reg 3.3e-12 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00138 - - gmx:102659569 149.058