Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00127 ATGGATGTTCTCAAAGATAGGTGCCTAATATCTGTTTTGGAAGGTAGAGTTGTGATGCATGATCTAATACAAGAAATGGGGCAAGAAATTGTTCGTCAACAATGTCTCAAGAATCCTGGAGAACGCAGTCGATTGTGGAAGCTTGATGAAATTCATCAAGTTTTAAGTAAGAACAAGGGGTCAGATGCAATACAGTGTATATTGCTAGACATATGCAAAATAAAAAAGGTTGAGCTAGATACTAAAACTTTCGAAAAAATGGACAATCTGAGGATGCTCCAGTTCTGTAAGTCTTCTAGTTCTGGCTATTGGAGTTCTCTTGAAAGTGAACCGGGCGGTTTAAAATTTGCTGATTGGAATGACGACTCAAATGTGTTTCTTGCATCATCTCTTGAAAGTCTACCGGACGGTTTAAAAGTTCTTCGTTGGGATGACTTTCCTCAAAGATCTTTGCCGCCGAACTTTTGTCCAGAAAATCTAGTGAGACTCGAAATGCCACATTGCCATCTTGAACAACTCTGGGAAGGAAATCAGGATTTACCGAATTTGAAAAGGCTGGACCTGAGATATTCTCGGGAACTGATTGGAATACCGGACCTTTATCTGTCACCAAATATTGAAGAAATAATTCTCAGTAAGTGTGAAAAGTTGAATCAGGTTTACTCCTCAGGATTCCTCAGCAAGCTCAAATTTTTATGTTTAATTGGCTGTGTTGAGCTTAGGAGTTTAACTATTCCGAGCAATATTCTATCGGGATCACCAGGATTAATCCTTCTTTCCGGTTGTGGCAAGCTTGAAAGGTTTTCAATCAGTGAAAGTCCATTATATTTTCGGTCATTATTAATCAGTAGTAGCCACCAGTCAAGCTCCCATCACTCACGCTTCGGTCGAGGAGCCTTTCAGCTCGCGCGCGGAACTCTCACAGGACACCCTGATGAAATTTCCTCAATTACTTTTGACAGATATGAGGAAGAAGAAAAAGAAGTAGAAGCGCCTTCTAATATACAATTAGTATATACTGAAGTGTTGAGAGAACTCAGAGAAGGTGTGTCCTCAATATTTTCAAGTTTCAATGAGTTCTGTTGGTTAGATCTCTCTCTGTGTAAATCTCTTACAAGCCTTTCATTTGAGTTTGACTTTGACTTCTCTAAGTTGAAATTCCTAAAGGAACTTCATCTTCGTGGTTGCTCAAATTTGGAAAAATTCCCCGAAATTGAGGACACAATGGAAAATCTAGCGGTGCTCATCTTAGACCTGACAGCAATACAGGCACTACCTTCATCCTTGTGCCATTTGGTGGGACTTGAAGAATTGAGCCTGCACGGATGCTCCAGTCTTGAGATTATTCCATCTTCCATTGGAAGTCTCAGCAAACTCTGCAAGTTAGGCCTTACCTACTGTGAATCACTTCAAACTTTTCCGAGCAGCATTTTCAAATTGAAGTTGACCAAACTTGATTTGCGTGGTTGCACAATGCTGAGGACCTTCCCAGAGATCTTGGAGCTTGCAGAAACTTTTGCTCACGTTAACTTAACAGAAACGGCTATAAAAGAACTACCTTCATCACTTGACAACTTGGTTGGGCTTCGGACCCTGCATCTGAACATGTGCACTGATCTCGAGTCACTTCCAAACAGTATTGTTAATCTAAACCTTCTCTCTAAACTTGATTGTTCAGGATGTGGCAAATTAACAGAAATCCCACGTGACATTGGTCGCCTATCATTATTAATGGAACTGTCACTGAGTGAGAGCGGAATTGTGAACCTTCCAGAGAGCATTTCTCAACTCTCAAGCTTGAAATCACTTGATTTAAGTGATTGCAAAAAGCTTGAATGCATCCCACAGCTTCCACCATTTCTAAAACAATTATTGGCATTGGATTGCCCATCCATTAGAAAAGTGATGTCAAATTCACTTATTCAAATCCCGTCAAATTCGAAAGAAGGCGTATTCAAATTTCATTTCACCAATGGTCAACAACTGGATCCAGATGCTCGTGCTAATATTATGGATGATGCATGGCTTAGGATGACCGAGGATGCATATAGAACTCTTTTCTTTTGTTTTCCAGGGAGTGCAGTTCCTCATTGGTTCCCTTTTCGTGGTGATGGACATTCAGTAACTATAAATGCAGATTCTCTAAAATCTTGCAGTGATGATAGGCTCATTGGTTTCGCTTTGTCTGTCGTTTTCCAACTGTCAGATACGAATGATATTGAAGGTAGATATGGTTCTTTTAGTTACAGCCTAAAATTTGAATCTGATGATGGCATACACATTCTTCCCAACAATGATTTGTTAAGAAACCATTTCTATTGGAAGGATGAAGAGAAAAAAATTGATCAAGATCACACATTCCTGTGGAAGTATAACACGGAATCAGAAAGGATGAGCTGCATGAGCCTTATGCCCAGTCATGCTCGCAGTGGCAGCTTCACTTTTGAGATCAGCCCATATGATTATGGCTTTCAGCGGCGACATTCCAAATCAATTGTTAGAGAGCTCAAATCAGTTGTCACCATAAAAGAATGCGGAATATGCCCTCTTTATAACAAAAAGAAAGATGATAATAATGCTGTTGCTGGTGACAATTCTGGCTTTATGAGATTTTCAAAAAATGACATTGAAGAACCTAGTAGAAGCAATGTTGCATAG 2658 0.398 MDVLKDRCLISVLEGRVVMHDLIQEMGQEIVRQQCLKNPGERSRLWKLDEIHQVLSKNKGSDAIQCILLDICKIKKVELDTKTFEKMDNLRMLQFCKSSSSGYWSSLESEPGGLKFADWNDDSNVFLASSLESLPDGLKVLRWDDFPQRSLPPNFCPENLVRLEMPHCHLEQLWEGNQDLPNLKRLDLRYSRELIGIPDLYLSPNIEEIILSKCEKLNQVYSSGFLSKLKFLCLIGCVELRSLTIPSNILSGSPGLILLSGCGKLERFSISESPLYFRSLLISSSHQSSSHHSRFGRGAFQLARGTLTGHPDEISSITFDRYEEEEKEVEAPSNIQLVYTEVLRELREGVSSIFSSFNEFCWLDLSLCKSLTSLSFEFDFDFSKLKFLKELHLRGCSNLEKFPEIEDTMENLAVLILDLTAIQALPSSLCHLVGLEELSLHGCSSLEIIPSSIGSLSKLCKLGLTYCESLQTFPSSIFKLKLTKLDLRGCTMLRTFPEILELAETFAHVNLTETAIKELPSSLDNLVGLRTLHLNMCTDLESLPNSIVNLNLLSKLDCSGCGKLTEIPRDIGRLSLLMELSLSESGIVNLPESISQLSSLKSLDLSDCKKLECIPQLPPFLKQLLALDCPSIRKVMSNSLIQIPSNSKEGVFKFHFTNGQQLDPDARANIMDDAWLRMTEDAYRTLFFCFPGSAVPHWFPFRGDGHSVTINADSLKSCSDDRLIGFALSVVFQLSDTNDIEGRYGSFSYSLKFESDDGIHILPNNDLLRNHFYWKDEEKKIDQDHTFLWKYNTESERMSCMSLMPSHARSGSFTFEISPYDYGFQRRHSKSIVRELKSVVTIKECGICPLYNKKKDDNNAVAGDNSGFMRFSKNDIEEPSRSNVA 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00127 885 Gene3D Ribonuclease Inhibitor 337 507 IPR032675 -
Pumo6g00127 885 Gene3D Ribonuclease Inhibitor 55 253 IPR032675 -
Pumo6g00127 885 Gene3D Ribonuclease Inhibitor 508 638 IPR032675 -
Pumo6g00127 885 SUPERFAMILY RNI-like 138 416 - -
Pumo6g00127 885 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 482 629 IPR044974 GO:0006952
Pumo6g00127 885 SUPERFAMILY L domain-like 349 636 - -
Pumo6g00127 885 Pfam Leucine Rich Repeat 159 178 IPR011713 -
Pumo6g00127 885 Pfam C-JID domain 690 854 IPR045344 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00127 Pumo-Chr6 1451219 1456218 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00127 455 628 WRKY Transcription Factor Family AT4G12020 32.955 4.18e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00127 - - pvu:PHAVU_002G323800g 957.207