Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00119 ATGGGGGGGCAGAATCTTTCCCCAAAGGAAAGGAGTAGAGATTGGATTGGAGTTCTTATGAACAGCAGCTTTGGCTATTGTGATTATCACCATGACCTTCGATCTAATGAGATGAATGTGTTCTGCGTAGACTGTGCACTTAGGATGTGTAGGCACTGTAAGGAAGCTCATTCCCTACATAGAAGGTTTCAGATTTACAAATACTCCTACCAGGATGTCTTCCGCCATGCCGAGCTGCAGAAGTATTTTGATTGCTCAAAAATTCAGACTTACATATCCAATAATGAAAGGATTGTGCATCTCAAACCTCGTCCTTCAATCAATAAATCTAAATCTGCTGATCTAAGCCCTGACTCTAAATCCAAAGAAACCGGCATATCAACAAGACCAAAGTCAGGTGGCACGTGTGAAGAATGTGGAAAACACTTGCAAGATGAGCGTAATCGCTTCTGCTCTATTACATGCAAGATCTCAGTGCATCCAGTGGAGACCCAAAACCAAGGTCAAAATCAAAGTGCTAGAGGCATCATCACTCCAAAACCTGAAGGCATTGACTTCACAATGAATGATAACCATAATTCGGAACCGGAGTCATCTATCTCTGAAGCTGAGCCATATGGGTGGGTTGAAGTTGTGAATTTCAGAAAGCGTCCAAGGAAAAGTATCCCTCAGAGGCCTGTCTTTGTTTTCACCTCTTAG 699 0.4278 MGGQNLSPKERSRDWIGVLMNSSFGYCDYHHDLRSNEMNVFCVDCALRMCRHCKEAHSLHRRFQIYKYSYQDVFRHAELQKYFDCSKIQTYISNNERIVHLKPRPSINKSKSADLSPDSKSKETGISTRPKSGGTCEECGKHLQDERNRFCSITCKISVHPVETQNQGQNQSARGIITPKPEGIDFTMNDNHNSEPESSISEAEPYGWVEVVNFRKRPRKSIPQRPVFVFTS 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00119 232 SUPERFAMILY B-box zinc-binding domain 17 66 - -
Pumo6g00119 232 ProSiteProfiles Zinc finger B-box type profile. 22 65 IPR000315 GO:0008270
Pumo6g00119 232 SMART bboxneu5 22 65 IPR000315 GO:0008270
Pumo6g00119 232 Pfam PLATZ transcription factor 67 157 IPR006734 -
Pumo6g00119 232 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 11 225 - -
Pumo6g00119 232 MobiDBLite consensus disorder prediction 109 131 - -
Pumo6g00119 232 MobiDBLite consensus disorder prediction 102 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00119 Pumo-Chr6 1352737 1354920 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Pumo6g00119 PLATZ 2.6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00119 - - gmx:100815813 466.463