Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00117 ATGGCGCAGCAGGCAGCAACAGCAACAGCAGCAATTGAGCAAGTGCAGTGCTTCGGCCGGAAGAAGACGGCGGTGGCAGTCACCTACTGCAAGCGCGGCCGTGGCCTCATCAAGATCAACGGCTGTCCGATCGAGCTCGTGGAGCCGGAGATCCTCCGCTTCAAGGCGTTCGAGCCTATCCTCCTTCTCGGCCGCCACCGCTTCGCTGGCGTGGACATGCGCATCCGTGTCAAGGGCGGCGGTCACACCTCCCAGATCTACGCCATCCGCCAAAGCATAGCCAAGGCTCTCGTGGCCTACTACCAGAAGTACGTGGACGAGCAGGCGAAGAAGGAGATCAAGGACATCCTCGTTAGGTACGACCGAACCCTCCTCGTCGCCGATCCTCGCCGCTGCGAGCCCAAGAAGTTCGGTGGTCGCGGTGCTCGCGCCAGGTTCCAGAAGTCCTACCGTTGA 456 0.6184 MAQQAATATAAIEQVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQAKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00117 151 ProSitePatterns Ribosomal protein S9 signature. 79 97 IPR020574 GO:0003735|GO:0005840|GO:0006412
Pumo6g00117 151 Gene3D - 5 151 IPR014721 -
Pumo6g00117 151 PANTHER RIBOSOMAL PROTEIN S9 10 148 IPR000754 GO:0003735|GO:0005840|GO:0006412
Pumo6g00117 151 Pfam Ribosomal protein S9/S16 19 151 IPR000754 GO:0003735|GO:0005840|GO:0006412
Pumo6g00117 151 FunFam 40S ribosomal protein S16 7 151 - -
Pumo6g00117 151 SUPERFAMILY Ribosomal protein S5 domain 2-like 14 151 IPR020568 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00117 Pumo-Chr6 1336197 1337070 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00117 1 151 Cytoplasmic Ribosomal Protein Gene Family AT2G09990 86.093 2.40e-94 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00117 K02960 - gmx:100816874 286.96